Query= MSMg01no452_p18.b1 MSMg01no452_p18.b1 CHROMAT_FILE:
MSMg01no452_p18.b1 PHD_FILE: MSMg01no452_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(618 letters)
>mm_chr11_80273581_80274599
Length = 1019
Score = 1151 bits (595), Expect = 0.0
Identities = 610/615 (99%), Gaps = 1/615 (0%)
Strand = Plus / Minus
Query: 5 gaattcctctgaccatcacactctgtatcagccagccccatcacctgcagctagagttgc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 gaattcctctgaccaccacactctgtatcagccagccccatcacctgcagctagagttgc 760
Query: 65 acctctagtggccaaactccccgcctgagccacctctgctatagtgcatacttgttgaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 acctctagtggccaaactccccgcctgagccacctctgctatagtgcatacttgttgaaa 700
Query: 125 tattagttcttacaccctccaattagtgatcacttacgtgttgagcatgattttgcacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 tattagttcttacaccctccaattagtgatcacttacgtgttgagcatgattttgcacag 640
Query: 185 caacatgtacttcagagatgtgatggccttggggctatcaatggagtcgtagccttcgaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caacatgtacttcagagatgtgatggccttggggctatcaatggagtcgtagccttcgaa 580
Query: 245 tgcctcatagaagtatgagtatgcagttttccagtccttctcctctgctgcatgaataat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgcctcatagaagtatgagtatgcagttttccagtccttctcctctgctgcatgaataat 520
Query: 305 gcctggccagtgaaaagaaagaacaaaggaccatataaaataacagaaccataagaaagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gcctggccagtgaaaagaaagaacaaaggaccatataaaataacagaaccataagaaagc 460
Query: 365 tctaaaaagccttagaaattgaccccaacagcatcaagttaccaatgagctcaagtgtaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tctaaaaagccttagaaattgaccccaacagcatcaagttaccaatgagctcaagtgtaa 400
Query: 425 acaaaggatctgccacaagtcac-agccagttcctaaaagctggcactagaaccccaggt 483
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 399 acaaaggatctgccacaagtcacaagccagttcctaaaagctggcattagaaccccaggt 340
Query: 484 gtcaagcctctctaatcagcaccacctttttaaattctcaagagttacagacccaattca 543
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtctagcctctctaatcagcaccacctttttaaattctcaagagttacagacccaattca 280
Query: 544 aaaggaaccccaaacacacagtttattatctctcccttccttcttaccacctagtcctac 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aaaggaacgccaaacacacagtttattatctctcccttccttcttaccacctagtcctac 220
Query: 604 caccactggaacaaa 618
|||||||||||||||
Sbjct: 219 caccactggaacaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_p18.g1 MSMg01no452_p18.g1 CHROMAT_FILE:
MSMg01no452_p18.g1 PHD_FILE: MSMg01no452_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:42 2005
(660 letters)
>mm_chr11_80125924_80126983
Length = 1060
Score = 1191 bits (616), Expect = 0.0
Identities = 653/676 (96%), Gaps = 17/676 (2%)
Strand = Plus / Plus
Query: 1 caggcctgggagcaggaacccggactggaggttgtatggaaatgcagcctgtgcaagtca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caggcctgggagcaggaacccagactggaggttgtatggaaatgcagcctgtgcaagtca 243
Query: 61 caaatgcataagagatagaaactagatgtgttcccacctcctgtcgcgctttgagaacgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 caaatgcataagagatagaaactagatgtgttcccacctcctgtcgcgctttgagaacgc 303
Query: 121 ag-----------------ggggcagctttccggctcacatggaaagctaggccgctgtc 163
|| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 304 agggggcattctgaagcctggggcagctttccggctcacagggaaagctaggccgctgtc 363
Query: 164 ctgggtgctgagcaggcaaaccccttgctctggcgtggtttgttcccagagagctcagct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctgggtgctgagcaggcaaaccccttgctctggcgtggtttgttcccagagagctcagct 423
Query: 224 ctgtggccccattaggccaatcactgatttctcagcctctcttgggacctggtatcccca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctgtggccccattaggccaatcactgatttctcagcctctcttgggacctggtatcccca 483
Query: 284 gttaaccttctgtgagactggatcccacagaaatctagttttgctgcttctggtatcagc 343
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 484 gttaaccttctgtgggactggattccacagaattctagttttgctgcttctggtatcagc 543
Query: 344 tgcctgatactagacgcctgcaatgcttaagagctggaggcagagggctgggtgctcagc 403
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgcctgataccagacgcctgcaatgcttaagagctggaggcagagggctgggtgctcagc 603
Query: 404 cctgacaaaggggcctgggtttcatgaagaggaacatgactgtactgtggagttgtgatt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cctgacaaaggggcctgggtttcatgaagaggaacatgactgtactgtggagttgtgatt 663
Query: 464 gttcctaaaggtcctacacagtgttatggtcaaaaaaaaaaaaatgctctggtcaaataa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gttcctaaaggtcctacacagtgttatggtcaaaaaaaaaaaaatgctctggtcaaataa 723
Query: 524 ggccaagttagacaaatggaaagctgaacccaatcagatttctcccctgctgggcctgga 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggccaagttagacaaatggaaagctgaacccaatcagatttctcccctgctgggcctgga 783
Query: 584 gagccctttttgtgggcatttgcttcatgctttccacgaggacttgctaactgggggaaa 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gagccctttttgtgggcatttgcttcatgctttccacgaggacttgctaactgggggaaa 843
Query: 644 gagggtgtttttgtgg 659
||||||||||||||||
Sbjct: 844 gagggtgtttttgtgg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
