Query= MSMg01no453_c15.b1 MSMg01no453_c15.b1 CHROMAT_FILE:
MSMg01no453_c15.b1 PHD_FILE: MSMg01no453_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:56 2005
(704 letters)
>mm_chr11_13130982_13132086
Length = 1105
Score = 1139 bits (589), Expect = 0.0
Identities = 673/701 (96%), Gaps = 1/701 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttttcttctcttgaattgtcttccttacttcattttactcttgatgttctct 64
||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct: 905 gaattcttttttcttatcttgaattctcttccttacttcatttcactcctgatgttctct 846
Query: 65 tggagtacatttgtgtcttttgtgagtttttaaaacatggttatgataattattttgaat 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tggagtacatttgagtcttttgtgagtttttaaaacatggttatgataattattttgaat 786
Query: 125 tattcatctggaaggtagcccaaattattttcactgggagtcattcctgtaggattagct 184
||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 785 tattcatctggaaggtatcccagattattttcactgggagtcattcctataggattagct 726
Query: 185 ataaattttcaagaagatatattatcttaaattttcatgtcattttgttcctgtgctagg 244
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 725 ataaattttcaagaggatatattatcttaaattttcatgttattttgttcctgtgctagg 666
Query: 245 ttttttcccatgcaattagcttgttggctgatttttttcttaatattttaaaattcaagc 304
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttttatcccatgcaattagcttgttggctgatttttttcttaatattttaaaattcaagt 606
Query: 305 cacattattctttcagtggttgtgtttacaatattcaagatatgactaagttatattagg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 cacattattctttcagtggttgtgtttacaatattcaagatatgactaagttatattagg 546
Query: 365 cttgatatgccaatttctcctaagggactggtattcatggatggagggcctactcttcct 424
|||||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 545 cttgatgtgccaacttcttctaagggactggtattcgtggatggagggcctactcttcct 486
Query: 425 ccgaggttaggttctgtcctagatcatccctacttccttctgttcaagtctttttcttgg 484
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 485 ccgaggttaggttctgtcctaaatcatccctacttccttctgttcaagtctttttctttg 426
Query: 485 ttgtttttcctttttaatgtctttgcattgctcccttggaaatattttgtttgtaggaca 544
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 425 ttatttttcctttttaatgtctttgcattgctcccttggaaatattttgtttgtaggaaa 366
Query: 545 taacttcacaacagtccattgcttccaagacacattctttcttcccctcctccatgatgc 604
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taacttcacaacagtccattgcttccaagacacattctttcttcccctcctccatgatgt 306
Query: 605 cccccaggctttggaagggatactattgctactactattttttttt-aatctgtgactta 663
|||| ||| ||||||||| ||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 305 cccctagggtttggaaggtatactattgctactacttttttttttttaatctgtgactta 246
Query: 664 ttgttggataattatattataggagtaatgatttagtctca 704
| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 245 tggttggataattatattataggagtactgatttagtctca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1105
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1095
Effective search space: 759930
Effective search space used: 759930
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no453_c15.g1 MSMg01no453_c15.g1 CHROMAT_FILE:
MSMg01no453_c15.g1 PHD_FILE: MSMg01no453_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:56 2005
(681 letters)
>mm_chr11_12978565_12979646
Length = 1082
Score = 1266 bits (655), Expect = 0.0
Identities = 676/683 (98%), Gaps = 3/683 (0%)
Strand = Plus / Plus
Query: 1 atctgagttcctttcagctcttctagtttaatgagttaaaatatctttttaacttgtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctgagttcctttcagctcttctagtttaatgagttaaaatatctttttaacttgtaac 260
Query: 61 ttttagatttgaataattagggttagaagatcctctgagtgtccttcaatgcataaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttagatttgaataattagggttagaagatcctctgagtgtccttcaatgcataaatat 320
Query: 121 cttcccaggctcctggttacaatgaacaaatttaatttgagtaaatctgttgtacttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttcccaggctcctggttacaatgaacaaatttaatttgagtaaatctgttgtacttggc 380
Query: 181 ttttcttttaagccacaagctcatctgagaatgaaagcttatattatgctatataattat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcttttaagccacaagctcatctgagaatgaaagcttatattatgctatataattat 440
Query: 241 taagtagtaagggtttatgtggaatagaatagctgtgaggaaataagattgaaaggggat 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 taagtagtaagggtttatgtggaatagaatagctgtgaggaaatgagattgaaaggggat 500
Query: 301 atatccaagataagcattagtaggtgagctttctactgggacttggaaaagaaaatgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatccaagataagcattagtaggtgagctttctactgggacttggaaaagaaaatgtgt 560
Query: 361 caattatgtatggcaa-tgtcattacagctttaagcttattcaagtttatactactttaa 419
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caattatgtatggcaaatgccattacagctttaagcttattcaagtttatactactttaa 620
Query: 420 aattcaataaataggttatttttatgtgtgtgtatgggggggtcttactacatctcacgg 479
|||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||
Sbjct: 621 aattcaataaataggttatttttatgtgtgtgcatgggggg-tcttactgcatctcacgg 679
Query: 480 ttccttcacaaaaaattatctttcaaattggttttgaccttttggaattttctttcatct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttccttcacaaaaaattatctttcaaattggttttgaccttttggaattttctttcatct 739
Query: 540 tctaaa-aaacagaatgtttttctccaaatggtctttgattttatctcttgcttcaaagt 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tctaaagaaacagaatgtttttctccaaatggtctttgattttatctcttgcttcaaagt 799
Query: 599 ccaaatagatgactttaaattgaacaaatgctaaaaattttctcaaattgtcttgaaatg 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ccaaatagatgactttaaattgaacaaatgctaaaaattttctcaaattgtcttgaaatg 859
Query: 659 ggagtaaggcttctatttctgac 681
|||||||||||||||||||||||
Sbjct: 860 ggagtaaggcttctatttctgac 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
