BAC Information

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BAC

Clone NameMSMg01-454J12
Chromosome11 (Build37)
Map Location 31,537,719 - 31,537,960
singlet/doubletsinglet
Overlap genenone
Upstream geneAcyp2, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2
Downstream gene2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454J12.T7 (MSMg01no454_j12.b1)MSMg01-454J12.TJ (MSMg01no454_j12.g1)
ACCAG541334AG541335
length759764
length of high quality
(start - end)
208 (321 - 528)243 (71 - 313)
definitionCHROMAT_FILE: MSMg01no454_j12.b1 PHD_FILE: MSMg01no454_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:50 2005CHROMAT_FILE: MSMg01no454_j12.g1 PHD_FILE: MSMg01no454_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAAGGCGCGGA
ATTCAACCCTACCGACAAGACCAGCCTGGGCTCTGTGAAAATTCCATGTG
TTGGCCAGATTTTGTCAACGTGACACAAACCTAGACATCCCTAGGTAGAG
GAAACCTCAATTGAGGTACTTCTTTCATCAGATTGGATTGCCAATCAATG
TAGGATAGCCAAGCCTACTGTGGGCAGAACCATCCCTAGGCAGGTGAGCC
TGGGCTTTATAAGAAAGGTAGCTGGGAGCACACAGTGAACAGTGTGCCAC
CTTGGTCTCTGCTTCTGNTCCTGCCTCCAGCTCCTGTCTTGAGTTCCTGC
CCTGGCTTCCCTCAGTGATGGTCAGAGATGTAGGCTGAAATAAACCCTTT
CTTGCTCTGGTTGCTTTTGCTCATGGTGTCTGTCACAGCAGCATAAACTA
AGACACTCCACCAAGTAAATACTTTCCTAAGTAACAGAACCTAATGAATG
ACTTCTAAGTTGGCTGCCTTATCCAGATAGGAGAAAATTCCTTTTCCATG
TGGAATTGCCATGTGGTCTCCAGTATCAGGTGATGTCACATCCTGGAGCT
CCACTTAGGGGTGCATTTCTTACTCCACAAGCTCCTCAAAATTGTTTCTT
TCCCGTGGAAAAACTTACATTTATGATAATAAAAAATGGGCCAATTGCTA
TTAATAAAAACAGGCTGAAACTGGGGAAAAATAACCTTTTGCTTTTGGAA
AAACCTCCN
CATGCAGTGGGAGGCCTGGNGGCCGCCTGGTTTCAAAATAGAGGTGAACT
ATAGAAGTTTCAGCAAAATTCAGCTGCACTGTAGATCGTAATGGGAACGC
TGGATGCCTACAAAGCAAGTCTTTTTTAAAAGTTCATTTCCCCAAAATAT
ACACAAATCTGGATTGTGTATGAGTCCTCCCAATTTTAAGGAAATCTCTA
TTGCAAACTATTCACGTTACTTTTGAGCCCCTGGAAGGCTGCACATATTA
CACTGTGAAGTAAATCTGGCTAGTAACTGCTCAGAGCCTCATCTAGGGAC
CCCGCCCCCCCATTCATCATCTTCCGTGTGGGCCGGCATACAAGGGACTT
TCACAGCACAATTACTAGATTTTGTACATACCAGTCCCAGCCTCGAGACA
GCTACACAGGAGAAAGGGGGGAGGGGTGTGGCAGACAACTGATTTGAGTC
CAAAGACCCAGATTATGGTCACCTGGGTTAGCATGTTTTCTCTGGGGCAC
TCAGTGGCTGGAGCCTGTGCACTGTTGACTGCAGGGGCTGCGCGCGTCCT
TCTGTGGACAAAGAGTGACACTGCGGAAAGCCTCTCGTAGAATACAAAAA
TTCCCTGTTGTGCTCATGAGAAGCCAAAAGAGGGACCAAAACTTTTTTTT
TTTCACTATTACCCGGTCGCCTCTTCCCCTTAACCCCCTTAATTATTTTA
ATTCTTCCCATTTTCCTAATTGACTTTTATTAACCCCGTCCTTTTTTTTT
CTTGTTACTATACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_j12.g1 MSMg01no454_j12.g1 CHROMAT_FILE:
MSMg01no454_j12.g1 PHD_FILE: MSMg01no454_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:50 2005
         (243 letters)



>mm_chr11_31537519_31538161
          Length = 643

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctgcactgtagatcgtaatgggaacgctggatgcctacaaagcaagtcttttttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctgcactgtagatcgtaatgggaacgctggatgcctacaaagcaagtcttttttaaa 260

                                                                       
Query: 61  agttcatttccccaaaatatacacaaatctggattgtgtatgagtcctcccaattttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttcatttccccaaaatatacacaaatctggattgtgtatgagtcctcccaattttaag 320

                                                                       
Query: 121 gaaatctctattgcaaactattcacgttacttttgagcccctggaaggctgcacatatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |
Sbjct: 321 gaaatctctattgcaaactattcacgttacttttgagcccctggaaggctgcacagaaga 380

                                                                       
Query: 181 cactgtgaagtaaatctggctagtaactgctcagagcctcatctagggaccccgcccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactgtgaagtaaatctggctagtaactgctcagagcctcatctagggaccccgcccccc 440

             
Query: 241 ca 242
           ||
Sbjct: 441 ca 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)