BAC Information

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BAC

Clone NameMSMg01-454M23
Chromosome11 (Build37)
Map Location 45,093,590 - 45,094,011
singlet/doubletsinglet
Overlap genenone
Upstream geneIl12b, Ublcp1, 3732413I11Rik, Ebf1
Downstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454M23.T7 (MSMg01no454_m23.b1)MSMg01-454M23.TJ (MSMg01no454_m23.g1)
ACCAG541498AG541499
length7701,019
length of high quality
(start - end)		426 (51 - 476)---
definitionCHROMAT_FILE: MSMg01no454_m23.b1 PHD_FILE: MSMg01no454_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:07 2005CHROMAT_FILE: MSMg01no454_m23.g1 PHD_FILE: MSMg01no454_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTGCATTCCACCGCAAGGAAATAAAAACATCAACAGGAAA
CAGACATTGGGTCTCTTGTTCCACCTTTCAACCCTATGCCCTAAGACATT
GTGACTCCCCATTGTCTATAAAACTTGGCCAATAAACTCAACAAGCTGGT
TTGGCTCCAGGTTTGCCTGCCCGCTGCAGGACATGCTTAATAGTCAGTAT
GTGCTCTCCTCTCCAGGAGTACTCACCAGTCTGCAGATATAATACCCATC
ACCTTTGTTCATATGCACTGATATCCATACCCTCTCTCAAATATACATAT
CACTTCTGCCTTTGTCGGAATTCACTACCTACAGCCCAATTCAAATGTCT
CTCTTGAGAAGATCCTCTTGAGGGTCTGTCTACCTTGGCATTAATTCATC
CAAATCAATTAAAAGTCTTCACTGGCTTCCCACTGGATCGAGAGGTGGAA
AGAGCGATTATTTTGGTATCTAAATTCTAAAAGATCTGCCTGGAAAGCTA
ATCTGGGGCCTCCTAACTTTTGCAGACTTTGTGGTTTTCGACCCCGGGAA
CCAAACCACAGGTAATTCCCTCCTGGTTGAAAAAAAAACCCCCCCCAACG
CTGGGGGTTTTTCCCGGCCGGCAAAACCCCCCCCCTAAAATGTGGACCTT
CCTAAAAAATTTCCCTTGCTTCAAATTTATGTCCCCTATATTTGTAAGTT
CCAACCTTTTTTTATTTTTT

AGAACGCCGGTAGCCCGCCAGCACGCACGGTCGGGCGCTCCTCTTACGAC
CCAGTACGGCTTCCCCGCAGTCCCTTCCCTTCCCATAGCTAGAATTGACT
TGTATATATCGGCACGCGTTGCGCTAATGCTTAGCTCCTGACCGAAGTCA
TTTATCCGACGCGGAGATGCAGAAAGAGNCAATAAGATAAAAGTATGGTG
CAGGTAGAACAAGCACACGTGCAAGAGCGTTATAATAACGCTCGTTACTT
ATTCTACGTTGTTCCGTCGTTGTTTGTAGTGTGTTAGGGGAACGTTCGTG
TGCGGATATAANGAAAAAGTACACAGTGGTCGTTAAATAAGGGGGGAAAT
ATACGAGAGGATCCGAGCGCGGGATGTGGTTCGTGAGTGAAAACAAAAGT
ACGCCGGGGACACGGATGCAATTTCGCATGCGGGTACTGAGTTTATTCGC
TCCAGTCGAGTAAGTGAAAGAACGGAGCCGGAGCGCTGTCGTGTATGATG
TGGCGGCGAACCGCAGTTAGCTGGCAGCGCGCCTCAGACGAAGTGAAGGG
ATGGAACTGTCATAGTACGATTGCGGCGCGCGAATCAACGTTTTGCGTTT
ATGCGTTCTAGTAATCGAGAGAATGCGCATAGTAGTTTCGAACAACATAA
TTACCTAATGGCGGCACGGCCATTATTATGCGCGCCAGCGCAAACTATTA
AGCGCGGGCGCGATGATACGCAGCGCGGCGCGCGCGCGGTGTACGCGAAA
TTATCCCGCGTCCTATTCTGTCACCTCCTCCACCTCAAAGCGCGTGGAGG
GGGCACGGGCTGACGAGACACATTACTTTCGACTGAGTAGAATAGTAAAG
ACNCGAGACGCATGATAGGGAGTTGTGATGCGCCGCACAGTAAGCTCTGA
CACAATGTGGGGCGCGGCGCGCCACGTGATCGGAGGCGCGACGGCGAAGA
TGACGGGCAGTCGCGGATCGATGCGATGCGATTCGCCGTCCGCGTACGAT
AGTGCGTTTATATTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_m23.b1 MSMg01no454_m23.b1 CHROMAT_FILE:
MSMg01no454_m23.b1 PHD_FILE: MSMg01no454_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:07 2005
         (426 letters)



>mm_chr11_45093386_45094211
          Length = 826

 Score =  785 bits (406), Expect = 0.0
 Identities = 418/422 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgcattccaccgcaaggaaataaaaacatcaacaggaaacagacattgggtct 64
           |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgcaaaccaacgcaaggaaataaaaacatcaacaggaaacagacattgggtct 264

                                                                       
Query: 65  cttgttccacctttcaaccctatgccctaagacattgtgactccccattgtctataaaac 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 cttgttccacctttcaaccctatgccctacgacattgtgactccccattgtctataaaac 324

                                                                       
Query: 125 ttggccaataaactcaacaagctggtttggctccaggtttgcctgcccgctgcaggacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttggccaataaactcaacaagctggtttggctccaggtttgcctgcccgctgcaggacat 384

                                                                       
Query: 185 gcttaatagtcagtatgtgctctcctctccaggagtactcaccagtctgcagatataata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcttaatagtcagtatgtgctctcctctccaggagtactcaccagtctgcagatataata 444

                                                                       
Query: 245 cccatcacctttgttcatatgcactgatatccataccctctctcaaatatacatatcact 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccatcacctttgttcatatgcactgatatccataccctctctcaaatatacatatcact 504

                                                                       
Query: 305 tctgcctttgtcggaattcactacctacagcccaattcaaatgtctctcttgagaagatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctgcctttgtcggaattcactacctacagcccaattcaaatgtctctcttgagaagatc 564

                                                                       
Query: 365 ctcttgagggtctgtctaccttggcattaattcatccaaatcaattaaaagtcttcactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctcttgagggtctgtctaccttggcattaattcatccaaatcaattaaaagtcttcactg 624

             
Query: 425 gc 426
           ||
Sbjct: 625 gc 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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