BAC Information

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BAC

Clone NameMSMg01-456N04
Chromosome11 (Build37)
Map Location 57,320,868 - 57,321,078
singlet/doubletsinglet
Overlap gene1810073G14Rik
Upstream geneGria1, LOC667878
Downstream geneMfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456N04.T7 (MSMg01no456_n04.b1)MSMg01-456N04.TJ (MSMg01no456_n04.g1)
ACCAG543034AG543035
length776759
length of high quality
(start - end)
230 (44 - 273)355 (81 - 435)
definitionCHROMAT_FILE: MSMg01no456_n04.b1 PHD_FILE: MSMg01no456_n04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:46 2005CHROMAT_FILE: MSMg01no456_n04.g1 PHD_FILE: MSMg01no456_n04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTTTCCAAGACAATGGATGTCATAGCAGAAGGGGACCCTGGATT
TAAAAGAACCAAGGGCCTGATGAATCGGACTTCTACGCTGTCTCAGGTTC
TGTTTCCTTTACCTATGCTCTTCCTGTTTGTGTTTTGATTTGATTTTTGC
TGTTGTCGACTTGGAAACCTTGTTAGTGTTGCTTTCTTTGGGATCCTTAG
GGGTTGTGAGATGGGCAGTGAGCCCCAGTGCATAGAGGAGTTCTAGCTGT
TTGTCCCTCTGTTTCCTTTTGAGCAGTCTCCTGTTAGCAGAGAGATGCTA
AGCCCTGTCATAGCTGTTAGATTAATTGTTAGATTAATGTTTAGACCTCC
CCCCGCCCCCACCCTCAGAACAGCACCTGTTGTCTTGGATGCTGTTTACA
CTGTTTAGCATTCTGATTTTGCTGCGATAACTTGTTCCTGTTGTTTCCTA
TTGTTCTCGTATTTCGACTGTGCTGTCTTTATGCCAATGCACCGTGCTTC
GCCCTATAATTTTTTCGACATTTTTCTCCTTCTTGGTTTGTTTTTTTTTC
CCGCTGCTTTTCTTTTTTCTCCCCTGCTCCTTCGTGTGTTCGTTATTTAC
CTTTTTCTATGTTTTTTTCTGTGTCCCCTCCTCCTTTTGTTCATCCATTT
TTTCTCTTTTTCCCTCTCTTTTTCGTTCTCGTTTCCTTTACTTACTTTTC
CCTTTATCCTCGCTTCTCTTTTTTTA
ATCTTTCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGC
CTCAAACTCAGAAATCTACCTGACTCTGCCTCCCAAATGCTGGGATTAAA
GGTGTGCGCCACTACCGCCTGGCTAAATAAATCTTTCTAAAAAATATTTT
AAAGGATGCTTTAAATCTGATGTCTGGGCCACTCCAGCCAGAAAAAGCAA
GTAGGCTGACTATAGAGCCTCACCTCTCTCTCCTGTCCTCCAAATTCAAT
CCCCCAGTTTCATTTCCTGCTCTGTAACAGACCTTCTGCTGCACCCTCCC
CTTTTTCTCTACCCCCATCTCCAATGGATTGCATATACCTTCATCTCCAA
CCTTCTTTCCCTTCCTTCATTTATTTTTCCCAATCCCCAAGACCAGTAAG
AGTTCCCTGTTGACCCACCTGTCAAGTCTGCCACAGAATATACTACCCCA
TACCATATGTAGATGATCCTTATATTTCCATTCCTCTTTCTCCCCCCCAA
ATCTCTCTAGTTTGATGTTCAGTATTTGTTCTATAATATCTCTTTGATTC
TTTCCTCCTTTGTTTGTTTGCCCCCCTTCCTTATTATTTTCCTGTTCCAC
TCTTTGTTTAATCCCCCTGTTCTTCTCCCCCTTCCCTGGATCCCCTTTAT
TTCTCTCCCTCTTCTTACCTCTCTTTTTTTTATCCCTCTTATTTTTCTAC
CCCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_n04.b1 MSMg01no456_n04.b1 CHROMAT_FILE:
MSMg01no456_n04.b1 PHD_FILE: MSMg01no456_n04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:46 2005
         (230 letters)



>mm_chr11_57320649_57321278
          Length = 630

 Score =  408 bits (211), Expect = e-118
 Identities = 211/211 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  aagacaatggatgtcatagcagaaggggaccctggatttaaaagaaccaagggcctgatg 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aagacaatggatgtcatagcagaaggggaccctggatttaaaagaaccaagggcctgatg 371

                                                                       
Query: 80  aatcggacttctacgctgtctcaggttctgtttcctttacctatgctcttcctgtttgtg 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatcggacttctacgctgtctcaggttctgtttcctttacctatgctcttcctgtttgtg 311

                                                                       
Query: 140 ttttgatttgatttttgctgttgtcgacttggaaaccttgttagtgttgctttctttggg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttttgatttgatttttgctgttgtcgacttggaaaccttgttagtgttgctttctttggg 251

                                          
Query: 200 atccttaggggttgtgagatgggcagtgagc 230
           |||||||||||||||||||||||||||||||
Sbjct: 250 atccttaggggttgtgagatgggcagtgagc 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)