MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-457D17
Chromosome	11 (Build37)
Map Location	80,470,953 - 80,471,378
singlet/doublet	singlet
Overlap gene	Myo1d
Upstream gene	Rab11fip4, LOC432584, Utp6, ENSMUSG00000072631, Suz12, Crlf3, Atad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1
Downstream gene	Tmem98, Spaca3, Accn1, 1700071K01Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rab11fip4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268451 MGI:2442920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC432584 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:432584
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 15 Proteins pseudo : _no_value

name	Utp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216987 MGI:2445193
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000072631 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100038598 MGI:3642888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Suz12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52615 MGI:1261758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crlf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54394 MGI:1860086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atad5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237877 MGI:2442925
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1110002N22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68550 MGI:1915800
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Centa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216991 MGI:2663075
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf135 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71956 MGI:1919206
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhot1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59040 MGI:1926078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rhbdl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246104 MGI:2179276
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5730455P16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70591 MGI:1917841
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfp207 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22680 MGI:1340045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043601 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	LOC100042726 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Psmd11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69077 MGI:1916327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdk5r1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12569 MGI:101764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Myo1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem98 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:103743 MGI:1923457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spaca3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75622 MGI:1922872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Accn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1700071K01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rab11fip4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363857 GeneID:268451 MGI:2442920
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB11 family interacting protein 4 (class II) transcript_id : NM_175543.3

name	Utp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803270 GeneID:216987 MGI:2445193
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UTP6, small subunit (SSU) processome component, homolog (yeast) transcript_id : NM_144826.3

name	ENSMUSG00000072631 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261956 GeneID:100038598 MGI:3642888
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : predicted gene, ENSMUSG00000072631 transcript_id : XM_001478669.1

name	Suz12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40353213 GeneID:52615 MGI:1261758
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of zeste 12 homolog (Drosophila) transcript_id : NM_199196.1

name	Crlf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055199 GeneID:54394 MGI:1860086
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytokine receptor-like factor 3 transcript_id : NM_018776.1

name	Atad5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71143101 GeneID:237877 MGI:2442925
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ATPase family, AAA domain containing 5 transcript_id : NM_001029856.1

name	1110002N22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053921 GeneID:68550 MGI:1915800
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110002N22 gene transcript_id : NM_183275.2

name	Centa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:26006858 GeneID:216991 MGI:2663075
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centaurin, alpha 2 transcript_id : NM_172133.1

name	Rnf135 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384767 GeneID:71956 MGI:1919206
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 135 transcript_id : NM_028019.2

name	Rhot1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626022 GeneID:59040 MGI:1926078
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ras homolog gene family, member T1 transcript_id : NM_021536.6

name	Rhbdl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328355 GeneID:246104 MGI:2179276
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : rhomboid, veinlet-like 3 (Drosophila) transcript_id : NM_139228.2

name	5730455P16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802550 GeneID:70591 MGI:1917841
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5730455P16 gene transcript_id : NM_027472.2

name	Zfp207 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361088 GeneID:22680 MGI:1340045
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 207 transcript_id : NM_011751.2

name	LOC100043601 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149262007 GeneID:100043601
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : hypothetical protein LOC100043601 transcript_id : XM_001480944.1

name	LOC100042726 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261958 GeneID:100042726
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to Discs, large homolog-associated protein 4 (Drosophila) transcript_id : XM_001478693.1

name	Psmd11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053904 GeneID:69077 MGI:1916327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 transcript_id : NM_178616.3

name	Cdk5r1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254597 GeneID:12569 MGI:101764
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cyclin-dependent kinase 5, regulatory subunit (p35) 1 transcript_id : NM_009871.2

name	Myo1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118026910 GeneID:338367 MGI:107728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myosin ID transcript_id : NM_177390.3

name	Tmem98 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22095006 GeneID:103743 MGI:1923457
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 98 transcript_id : NM_029537.1

name	Spaca3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626053 GeneID:75622 MGI:1922872
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sperm acrosome associated 3 transcript_id : NM_029367.1

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074519 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_001034013.2

name	Accn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111074520 GeneID:11418 MGI:1100867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : amiloride-sensitive cation channel 1, neuronal (degenerin) transcript_id : NM_007384.2

name	1700071K01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385139 GeneID:237880 MGI:3588264
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1700071K01 gene transcript_id : NM_001033765.2

name	Rab11fip4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28202067 CCDS:CCDS25123.1 GeneID:268451 MGI:2442920
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : Rab11-FIP4-like protein_id : NP_780752.1

name	Utp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450209 CCDS:CCDS25124.1 GeneID:216987 MGI:2445193
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 note : hepatocellular carcinoma-associated antigen 66 product : UTP6, small subunit (SSU) processome component, homolog protein_id : NP_659075.1

name	ENSMUSG00000072631 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261957 GeneID:100038598 MGI:3642888
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478719.1

name	Suz12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40353214 CCDS:CCDS25125.1 GeneID:52615 MGI:1261758
definition	GO_component : GO:0035098 - ESC/E(Z) complex [Evidence ISS]; GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0001739 - sex chromatin [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0042054 - histone methyltransferase activity [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0016571 - histone methylation [Evidence IMP]; GO:0016574 - histone ubiquitination [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : suppressor of zeste 12 homolog protein_id : NP_954666.1

name	Crlf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055200 CCDS:CCDS25126.1 GeneID:54394 MGI:1860086
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 note : cytokine receptor related protein 4; cytokine receptor-like molecule 9; cytokine receptor-like factor 2 product : cytokine receptor-like factor 3 protein_id : NP_061246.1

name	Atad5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71143102 CCDS:CCDS25127.1 GeneID:237877 MGI:2442925
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : chromosome fragility associated gene 1 product : ATPase family, AAA domain containing 5 protein_id : NP_001025027.1

name	1110002N22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053922 GeneID:68550 MGI:1915800
definition	codon_start : 1 product : hypothetical protein LOC68550 protein_id : NP_899098.2

name	Centa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:26006859 CCDS:CCDS25128.1 GeneID:216991 MGI:2663075
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005740 - mitochondrial envelope [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0043533 - inositol 1,3,4,5 tetrakisphosphate binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005547 - phosphatidylinositol-3,4,5-triphosphate binding [Evidence ISS]; GO:0043325 - phosphatidylinositol-3,4-bisphosphate binding [Evidence ISS]; GO:0005546 - phosphatidylinositol-4,5-bisphosphate binding [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007507 - heart development [Evidence NAS]; GO:0048017 - inositol lipid-mediated signaling [Evidence ISS]; GO:0043087 - regulation of GTPase activity [Evidence IEA] codon_start : 1 product : centaurin, alpha 2 protein_id : NP_742145.1

name	Rnf135 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312628 CCDS:CCDS25129.1 GeneID:71956 MGI:1919206
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : U 2-3-0 product : ring finger protein 135 protein_id : NP_082295.1

name	Rhot1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31559891 CCDS:CCDS25130.1 GeneID:59040 MGI:1926078
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0031307 - integral to mitochondrial outer membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA]; GO:0019867 - outer membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence ISS]; GO:0019725 - cell homeostasis [Evidence ISS]; GO:0047497 - mitochondrion transport along microtubule [Evidence ISS]; GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : mitochondrial Rho 1 protein_id : NP_067511.4

name	Rhbdl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21218408 CCDS:CCDS25131.1 GeneID:246104 MGI:2179276
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] codon_start : 1 note : rhomboid like gene 4; rhomboid related gene 1 product : rhomboid, veinlet-like 4 protein_id : NP_631974.1

name	5730455P16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625765 CCDS:CCDS25132.1 GeneID:70591 MGI:1917841
definition	GO_process : GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 product : protein kinase Njmu-R1 protein_id : NP_081748.1

name	Zfp207 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6756051 GeneID:22680 MGI:1340045
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger protein 207 protein_id : NP_035881.1

name	LOC100043601 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149262008 GeneID:100043601
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480994.1

name	LOC100042726 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261959 GeneID:100042726
definition	codon_start : 1 product : similar to Discs, large homolog-associated protein 4 (Drosophila) protein_id : XP_001478743.1

name	Psmd11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053905 CCDS:CCDS25133.1 GeneID:69077 MGI:1916327
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : proteasome 26S non-ATPase subunit 11 protein_id : NP_848731.2

name	Cdk5r1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753384 CCDS:CCDS25134.1 GeneID:12569 MGI:101764
definition	GO_component : GO:0030424 - axon [Evidence ISS]; GO:0043025 - cell soma [Evidence ISS]; GO:0043292 - contractile fiber [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0043197 - dendritic spine [Evidence ISS]; GO:0030426 - growth cone [Evidence ISS]; GO:0016020 - membrane [Evidence ISS]; GO:0005624 - membrane fraction [Evidence TAS] [Evidence IDA]; GO:0031594 - neuromuscular junction [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] GO_function : GO:0045296 - cadherin binding [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence ISS]; GO:0016534 - cyclin-dependent protein kinase 5 activator activity [Evidence TAS]; GO:0008092 - cytoskeletal protein binding [Evidence TAS]; GO:0016301 - kinase activity [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0043539 - protein serine/threonine kinase activator activity [Evidence ISS] GO_process : GO:0007213 - acetylcholine receptor signaling, muscarinic pathway [Evidence ISS]; GO:0048675 - axon extension [Evidence ISS]; GO:0007411 - axon guidance [Evidence IMP]; GO:0007413 - axonal fasciculation [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0009790 - embryonic development [Evidence ISS]; GO:0035235 - ionotropic glutamate receptor signaling pathway [Evidence ISS]; GO:0031175 - neurite development [Evidence ISS]; GO:0007158 - neuron adhesion [Evidence IMP]; GO:0030182 - neuron differentiation [Evidence ISS]; GO:0001764 - neuron migration [Evidence IDA]; GO:0043525 - positive regulation of neuron apoptosis [Evidence ISS] codon_start : 1 product : cyclin-dependent kinase 5, regulatory subunit (p35) 1 protein_id : NP_034001.1

name	Myo1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118026911 GeneID:338367 MGI:107728
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : molecular motor product : myosin ID protein_id : NP_796364.2

name	Tmem98 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22095007 CCDS:CCDS25135.1 GeneID:103743 MGI:1923457
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC103743 protein_id : NP_083813.1

name	Spaca3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626054 CCDS:CCDS25136.1 GeneID:75622 MGI:1922872
definition	GO_component : GO:0001669 - acrosome [Evidence IDA]; GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0003796 - lysozyme activity [Evidence IEA] GO_process : GO:0016998 - cell wall catabolism [Evidence IEA]; GO:0035036 - sperm-egg recognition [Evidence IMP] codon_start : 1 note : acrosomal sperm protein; sperm lysozyme-like protein 1 precusor; sperm c-type lysozyme-like protein product : lysozyme-like protein 3 protein_id : NP_083643.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77404288 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform b protein_id : NP_001029185.1

name	Accn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680622 CCDS:CCDS25137.1 GeneID:11418 MGI:1100867
definition	GO_component : GO:0043025 - cell soma [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0043005 - neuron projection [Evidence IDA] GO_function : GO:0015280 - amiloride-sensitive sodium channel activity [Evidence IDA]; GO:0005261 - cation channel activity [Evidence IDA] [Evidence IMP]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005272 - sodium channel activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA] GO_process : GO:0006812 - cation transport [Evidence IDA] [Evidence IMP]; GO:0050974 - detection of mechanical stimulus during sensory perception [Evidence IMP]; GO:0006811 - ion transport [Evidence IEA]; GO:0043066 - negative regulation of apoptosis [Evidence IMP]; GO:0007602 - phototransduction [Evidence IMP]; GO:0001101 - response to acid [Evidence IMP] [Evidence IDA]; GO:0009612 - response to mechanical stimulus [Evidence IMP]; GO:0007605 - sensory perception of sound [Evidence IMP]; GO:0006814 - sodium ion transport [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; degenerin product : amiloride-sensitive cation channel 1, neuronal isoform a protein_id : NP_031410.1

name	1700071K01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85702063 GeneID:237880 MGI:3588264
definition	GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC237880 protein_id : NP_001028937.1

name	LOC432584 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149262006 GeneID:432584
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 15 Proteins product : similar to phosphoglycerate mutase pseudo : _no_value transcript_id : XR_034910.1

clone name	MSMg01-428I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-128K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-425F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-541H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500N06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452P18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-535A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432P07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-261N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-178D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-211D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-071B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460N02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537G11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510A07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-141B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295F09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-188C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-333I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-064N01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193E08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-457D17.T7 (MSMg01no457_d17.b1)	MSMg01-457D17.TJ (MSMg01no457_d17.g1)
ACC	AG543347	AG543348
length	776	1,488
length of high quality (start - end)	426 (77 - 502)	---
definition	CHROMAT_FILE: MSMg01no457_d17.b1 PHD_FILE: MSMg01no457_d17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:22 2005	CHROMAT_FILE: MSMg01no457_d17.g1 PHD_FILE: MSMg01no457_d17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:22 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG CGGAATTCTTAAACTTGCCGACAACGGTCAGAGGCCTCTTGGTCACCTCT GTAATGCTGAGCTTGCCTTCGGGCCACATATTCTTCAGCACAGGATTTGA GCTGAGAAACAGAGAAAGAATGAGTCAAAGCTGCATTTAAATAAGGGGAA TAAAAAAGGCAATCTGTGCTGTCAAGTGAGTCCTAGGATCACGGTGCACT GCATACGGGATTCACAAAACCCAACTGGGAAAACTGTTGCATTAGAAAAC TATGGTCATACCATGAGGAATATTGTACCACAGACAATTTTCAAACTGTA GCACTTTAAAAAAATTCTTTAAACTTCTTTAAAGTGACATCCATTAAATT ACTATGTAGATATTTTGCATAGATAATGTGGCTCTTAGGAGATACACATC AATATGTATCTTATTGTCTTAGTCAGGGTTTCTGTTCCTGCACAAATGTC AGGACCAAGAAGCAGGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTC CATACTGCTGTCCATCACTAGAAGAATTCAGGACTGGACCTCCAGCTGGT CCGGGAATTAGGAGCTTGAGCCATAGGCCCTGTGAGGCATGGTCAATTAA CTGGTTTTGCGTCTCCCCGGCCTTGCTCCCATCCTGGCTTTCTTATAACA ACCCACCACTTCCCAGCCCCTGAATATGGGCTCCCCTCCTCCTCATCACT TTTTGATCCCCCCTCGTTCACTTATN	TGGGTGTGTGGGAGTTGANAANNAAGANACATANANNCAATAANAAGCAA TACAAACTAGAGTAATCAACTATATCTTTCTNCTGGTGNTGGAGCTTCNT CTCTTCTACGCCGTTATCCTCTCTGAGTCACGTATAGCTGGTATGCGACG TGTGCTANGATGCGAGCCATCAATATAATGTATATGGCTATACTGCGCCC CAACTCACCATCGGAGTTTTCATATTGTTCAACTATGGCTATTAGTGATA GGTATGATGTGTACACACTGGTGAGGAGTGTCATCTTTCACGGGCGCGAG AGTGTGGCTGATGGCGAGAGAACGTATGTCTCAGACACGAATAATATAAA CATATAAACATCAAGACAAAGAGTTATTAGTGATAGATAAGATTAAATAC GAAAACTACACATAGCACGTACTTACCGAGAGTGTGTTGTGTGTTGTGGG CTGGGTGGCACGTGAGCGAGTCAGCTGGCAGAACAGAGAAAGGTGCGAGC TCAAGAACAGGCGCCAGCCGCCAGGCGCCACTACATACACACACCGTATA GTTCTATCATACAAAGAGAATGATTCTTTGATTACGXXXXXXXXXXXXXX XXXXXAGAAAGCAGACGCACACTAGTCTTTGTCGTATGTATTGATCAGGA CGAGCCGGGCACGGGATAATACGCGAGATGTGAGCATATATCGGCGACCT TCTATCCTATATATATACCCACGATACTACCTCTCTCTCTAATTCCGCCT TTTATGTTTTTACTCTCCATACCCTTGACAAACTATCACGACGACATGAA AATCAATATTAAGTGATGAGCGTTACCGGTCGTGGAGAATGCAGAAATTA CTATAGCGCATAAGGTAGCGTAGAATCAGGCACAAGACGTGCATAATAAT TAAATGNATCTATTGCACAGTTGTCTCTCCGCACGCGCAGCCGACGCTNA TACTTATACGATCGGATAACGAGCAAGACAGTATATATGTACGAGCGCGA GCGAGAGGAATGACGCGAGACGTCATGCACACTTTNAGTAATCGCCATGG CAAATAGGAGTAGATTAGATACGGAGTGAGGAGGAATGAGAGTGCGGGAG GACGCACGTATGATTATAATATGCTACACATCCAGCCAGTCGCGCGTATA TCATTAATTGTATGAAGCGCGCACCAGAATATCGAGAATAATGATTGTAA GACATAAATCAATAATCATTATACTCGCATATATATCTANAATCATACAC GACTGAGTATGGATGTTATGATGGTGATGGAGTGATCGCGAGACGTCATA TCATGAGAGATATATCGCTGANANCACGCACATAAACACGAGCCGCACAG TCGAGAGTATACTATACATTATNCNTCATAAGTAGCTGCTGTGATACATG AGACGATCGTCTGAGATGGATATTATGNCTGTNGCTGAGCTGACTGCTCG TGCTGATAGTGTATACTCGCAGCTCTCTACGTCTGCGN
quality values	Open. Hide. 0 3 6 6 6 10 8 8 8 20 20 30 33 47 33 32 27 25 13 17 10 10 10 19 19 41 44 41 30 20 22 20 19 15 12 8 8 8 9 10 10 15 19 21 19 19 19 15 16 15 30 31 36 36 31 31 33 33 59 29 29 11 11 8 8 7 7 7 9 11 11 9 9 9 9 14 13 21 24 37 37 37 59 59 59 59 59 59 59 59 57 37 37 40 47 47 47 59 59 57 57 57 54 54 54 54 54 57 57 57 57 59 59 68 68 68 59 54 54 48 48 48 48 48 47 47 54 57 57 68 68 68 68 68 68 68 68 57 57 57 57 50 50 50 50 50 50 50 68 68 68 68 57 57 68 68 50 51 42 57 43 37 37 37 37 43 44 57 50 50 50 50 50 43 42 35 31 31 43 44 57 57 57 57 68 57 57 57 54 54 57 52 57 54 59 59 68 50 50 50 50 50 50 59 68 68 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 59 59 57 57 57 57 57 57 59 59 57 59 59 68 59 59 57 47 36 31 20 28 18 18 22 27 43 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 54 54 57 57 57 48 48 48 59 59 68 59 59 40 43 28 40 40 57 57 57 57 59 59 48 48 48 57 57 50 59 59 50 47 43 41 21 18 12 15 11 12 12 18 12 11 20 21 34 34 48 50 50 53 50 50 57 57 59 57 57 48 48 48 48 59 59 59 59 59 43 43 43 44 57 43 43 30 20 18 18 22 23 36 40 48 47 48 43 59 59 59 59 59 59 68 68 68 59 59 48 43 43 47 44 57 57 57 57 57 68 68 57 57 57 54 54 57 57 68 68 68 68 59 59 48 48 48 57 48 57 57 59 59 50 50 48 48 43 43 37 43 50 57 44 44 43 37 37 44 44 57 57 57 57 57 43 57 57 42 42 47 48 48 47 48 44 42 37 36 23 23 36 44 48 54 54 54 54 57 57 57 57 46 46 43 43 43 37 42 30 31 33 32 42 42 48 48 42 42 37 37 37 40 40 48 57 43 43 39 28 28 22 22 22 27 27 35 25 26 24 19 25 25 20 19 25 28 23 20 19 20 20 20 20 30 30 22 17 14 15 17 28 34 37 37 41 24 11 8 8 8 8 15 9 9 9 19 19 33 33 30 32 24 20 15 15 19 19 16 15 13 10 13 13 14 14 10 10 8 8 8 15 10 10 9 9 9 14 10 11 11 10 10 10 10 11 13 18 16 8 6 6 7 8 6 8 10 10 10 10 8 8 8 8 19 21 14 13 19 11 10 12 14 15 12 12 9 9 9 9 9 9 8 8 8 8 12 13 10 8 8 8 6 6 6 6 12 10 10 10 9 8 8 8 8 8 10 8 8 9 9 14 10 10 9 15 16 8 8 8 8 8 8 9 14 10 9 9 9 9 8 6 6 6 10 8 10 10 8 8 8 8 8 8 12 12 14 10 8 8 8 10 7 9 9 9 13 10 16 15 10 8 8 8 8 9 10 8 6 6 8 6 6 8 8 6 8 8 8 9 9 9 10 9 9 12 11 9 8 8 8 8 8 8 8 11 10 8 8 9 9 14 13 11 8 8 7 8 7 6 8 8 8 6 6 8 8 13 15 17 11 11 10 8 9 8 9 10 10 12 8 15 8 9 8 8 12 10 8 8 8 8 8 3 0	Open. Hide. 6 6 6 6 6 8 6 6 6 6 7 6 8 6 8 8 8 3 0 3 3 0 0 3 8 8 3 0 3 9 9 15 3 0 3 0 0 3 8 8 6 6 3 0 3 8 8 8 11 13 13 8 8 8 8 8 8 8 6 8 6 6 6 6 6 6 6 6 8 6 8 9 9 9 10 9 9 9 12 9 3 0 3 10 10 13 13 3 0 3 8 8 8 8 6 6 8 3 0 3 8 10 8 8 8 8 8 8 8 8 10 8 10 8 9 9 9 11 11 11 8 10 8 8 8 8 8 8 8 8 11 20 11 9 9 9 8 8 9 8 8 8 6 6 6 6 6 6 6 8 6 6 8 8 8 8 3 0 3 8 8 8 8 7 10 9 9 9 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 10 9 9 9 8 8 10 10 10 10 10 12 11 10 10 10 15 12 9 9 8 8 10 8 9 10 11 11 12 12 12 10 10 11 8 8 8 8 8 8 6 6 8 6 6 6 6 6 6 6 12 11 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 7 7 8 6 8 8 8 8 10 10 10 8 9 8 8 8 8 8 8 8 6 6 8 6 7 10 10 7 6 10 8 8 8 8 6 6 6 6 8 8 11 12 10 10 9 9 10 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 8 8 8 8 8 10 10 8 8 8 13 13 14 12 10 8 8 6 6 6 6 10 8 9 8 8 10 8 8 6 6 8 8 10 8 8 8 13 13 11 7 6 6 8 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 7 7 8 8 10 8 8 8 8 10 10 8 9 9 10 12 7 9 6 7 8 6 6 6 6 6 8 8 7 6 6 6 6 6 6 6 6 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 10 10 10 8 6 6 10 10 10 6 8 8 8 13 10 10 12 9 9 10 10 9 9 11 11 8 8 8 8 8 8 8 10 10 8 8 8 6 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 6 6 6 8 8 8 10 6 6 6 6 6 6 10 8 8 8 8 8 8 6 6 6 6 8 12 11 11 12 10 9 9 7 10 8 9 10 10 11 11 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 6 8 9 8 8 8 8 8 8 10 10 10 10 8 8 9 10 12 10 10 6 8 6 6 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 6 6 8 8 15 10 10 9 9 10 10 10 10 10 10 8 10 8 8 8 8 8 8 10 8 8 11 8 9 10 9 9 10 10 7 6 6 6 10 6 7 7 10 7 6 6 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 8 8 9 9 10 8 8 8 8 9 9 9 9 6 6 6 7 7 6 8 8 9 9 10 10 8 8 8 8 7 6 9 6 7 8 10 10 8 8 7 7 8 8 9 9 6 6 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 9 12 13 13 8 8 8 8 8 8 8 8 8 10 14 14 10 8 8 8 8 10 8 8 8 8 10 10 10 15 17 16 10 8 7 7 7 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 11 9 9 9 9 9 6 6 6 6 8 6 6 6 8 8 8 8 8 10 11 6 6 6 6 6 8 9 9 9 9 8 8 8 8 6 6 6 6 6 6 6 8 8 8 8 8 8 8 10 10 10 11 10 9 8 8 9 6 8 6 6 8 8 13 12 10 8 8 8 6 6 6 6 6 8 8 10 8 8 6 6 6 8 10 8 8 8 10 10 8 8 8 8 6 6 8 8 6 6 8 8 10 8 8 8 8 10 10 8 8 8 10 10 10 10 8 8 8 3 0 3 10 15 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 6 8 8 10 10 3 0 3 6 6 6 8 8 8 8 11 10 9 9 8 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 11 9 12 8 8 8 6 6 6 6 8 8 9 9 9 6 6 6 6 8 6 8 8 8 8 8 8 8 8 9 8 10 10 10 6 6 6 6 8 8 8 8 10 8 8 8 8 8 8 8 3 0 3 8 8 8 8 9 8 8 8 6 6 8 8 11 7 9 10 8 8 6 6 6 6 8 8 8 10 8 7 7 8 7 6 8 8 8 8 10 8 8 8 11 10 12 12 8 8 8 7 8 6 6 8 10 7 6 6 6 8 8 8 6 6 6 8 8 9 9 11 9 9 9 8 8 8 8 8 8 9 9 12 12 12 22 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 8 8 10 7 9 7 6 10 9 10 10 9 9 9 8 6 6 6 7 7 10 8 8 8 8 8 7 7 7 7 8 8 10 8 8 8 8 8 8 8 8 8 7 6 6 6 6 8 8 11 12 11 8 8 8 8 11 6 6 8 6 6 6 8 8 8 8 8 11 13 9 9 6 6 6 6 7 6 11 10 10 6 6 8 8 10 10 9 9 9 9 9 9 9 9 9 8 8 8 13 13 12 10 3 0 3 6 6 6 6 10 8 8 9 8 8 8 8 8 8 10 11 11 13 13 11 13 10 10 10 8 6 8 7 6 8 7 8 8 8 8 8 8 8 8 6 6 6 8 8 8 8 7 7 7 8 8 6 6 6 6 6 6 8 6 8 8 8 8 13 7 7 7 7 7 10 10 13 10 10 12 10 10 8 8 3 0 3 0 3 8 12 10 9 6 8 6 6 8 8 6 6 10 6 7 7 8 8 8 10 10 10 12 10 8 8 6 6 8 8 10 8 6 6 6 6 9 9 10 10 15 10 6 6 6 6 3 0 3 0 3 6 8 6 6 7 6 6 6 10 6 8 8 8 8 8 10 8 8 8 6 6 6 8 8 8 9 6 6 6 6 8 6 8 10 10 13 10 6 6 6 6 8 6 6 6 6 7 8 8 8 3 0 3 7 8 3 0 3 6 6 8 8 9 10 10 10 8 6 6 6 8 8 11 8 6 6 6 6 13 15 12 7 6 7 7 7 7 9 9 8 8 8 8 8 8 8 8 11 8 11 7 7 7 7 6 6 6 6 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no457_d17.b1 MSMg01no457_d17.b1 CHROMAT_FILE:
MSMg01no457_d17.b1 PHD_FILE: MSMg01no457_d17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:22 2005
         (426 letters)



>mm_chr11_80470753_80471578
          Length = 826

 Score =  808 bits (418), Expect = 0.0
 Identities = 424/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcagaggcctcttggtcacctctgtaatgctgagcttgccttcgggccacatattcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagaggcctcttggtcacctctgtaatgctgagcttgccttcgggccacatattcttc 260

                                                                       
Query: 61  agcacaggatttgagctgagaaacagagaaagaatgagtcaaagctgcatttaaataagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacaggatttgagctgagaaacagagaaagaatgagtcaaagctgcatttaaataagg 320

                                                                       
Query: 121 ggaataaaaaaggcaatctgtgctgtcaagtgagtcctaggatcacggtgcactgcatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ggaataaaaaaggcaatctgtgctgtcaagtgagtcctaggatcacggtgcactgcacac 380

                                                                       
Query: 181 gggattcacaaaacccaactgggaaaactgttgcattagaaaactatggtcataccatga 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggattcacaaagcccaactgggaaaactgttgcattagaaaactatggtcataccatga 440

                                                                       
Query: 241 ggaatattgtaccacagacaattttcaaactgtagcactttaaaaaaattctttaaactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatattgtaccacagacaattttcaaactgtagcactttaaaaaaattctttaaactt 500

                                                                       
Query: 301 ctttaaagtgacatccattaaattactatgtagatattttgcatagataatgtggctctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaaagtgacatccattaaattactatgtagatattttgcatagataatgtggctctt 560

                                                                       
Query: 361 aggagatacacatcaatatgtatcttattgtcttagtcagggtttctgttcctgcacaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggagatacacatcaatatgtatcttattgtcttagtcagggtttctgttcctgcacaaa 620

                 
Query: 421 tgtcag 426
           ||||||
Sbjct: 621 tgtcag 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information