BAC Information

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BAC

Clone NameMSMg01-457E17
Chromosome11 (Build37)
Map Location 101,883,449 - 102,059,375
singlet/doubletdoublet
Overlap geneMpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
Upstream geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik
Downstream geneBC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457E17.T7 (MSMg01no457_e17.b1)MSMg01-457E17.TJ (MSMg01no457_e17.g1)
ACCAG543395AG543396
length770742
length of high quality
(start - end)		459 (70 - 528)244 (88 - 331)
definitionCHROMAT_FILE: MSMg01no457_e17.b1 PHD_FILE: MSMg01no457_e17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:27 2005CHROMAT_FILE: MSMg01no457_e17.g1 PHD_FILE: MSMg01no457_e17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,883,449 - 101,883,907)(102,059,132 - 102,059,375)
sequence
GCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGNG
GAATTCTCCGGATTGCCTCCACTTCTTTCCATCTGATAAACTCCCTCTCT
GCCCAGTCCATTGCCACTGAAAGTAAGGTGAAACCAGCCCTCATCTGTTA
GCCTCTAGGAGAGTGGCTGTGCCTGCACTGCCTCAGTACGCAAAACTAGA
GCGGCAAACTTTGTCTGTAAAGGACGGAGTAGATATCGTAAGCTTCGTGG
TGGGGCAATCACTCAGCTCTTCATGACAAAGGAATAAGCACGACCTTGCT
TTTAAAAACAACAACAGGTGTCTGGCGTGGTGGCGCATGCCTTTAATCCC
AGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTG
GTCTACAGAGTGAGTTCCAGGACAGCCTGGGCTATGCAGAGAAACCCTGT
CTTGGAAAAAACAACAACAACAACAACAGGGGGCTGGAGAGATGGCTCAG
CGATTAAGAGCACTGACTGCTCTACTGAAGGTTTTGAGTTCAAATCCCAG
CAACGACATGGTGGGTCACAACCATCCCGTATTGAGATCTGATGCCCTCT
TTTTGGGGGGTCTGAATACAGTTACCGTGTACTAACTTATTATAAATCCA
CTCCTTTTATTACCACCTCCTGGGTCTTGGAAAAGAATGTTCACACGGCT
TAAAAACACCTGAACTGTCCTTGGCAAAAGGGCCCTGTAATTCTTTTTCC
AATTAAATCTCTTTTTTGTN

TTTTTTTTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATATAAATGTTGG
ATCCTGCTTTAGAATTTATTTGCCTGTGTTAAATTTCTTACCAGCCTGAG
TTTCCCTTGCACTTCAGTGGAATGGGTTCTGCAGGGAGATAAACCATATT
CATCCCATGGCTGTAGAGCCAGGATTCAGTGTCACAGACCCGGAGCCACT
GGTGGGCTCATCTTCATAGCTAATGGTAGGGTGGGTGTGGGAGAGTTGGC
ATGCTGAGCTTTGGATTAGAGCTTAGACTGTTTCTTTAGCACCCTCCCCT
GTCCCTCATCAGGACATTCTCCATGGCAACGGCACCCAGCAAGCATTCTA
CAACGATCCCTCTGTGCTCTACATCTCCCTGCATCGCTACGACAACGGGA
ACTTCTTTCCAGGCTCTGGGGCTCCTGAAGAGGTACAGTTCCTAGGCCCC
CTTTGGAGTCCTTCATGGAGGGAACTGGTCAGGACCTGTCCCGGAATTCC
CGTTCGTGGGTGCTGGTCCTCGTGAATTTTCTGAGGGTCTCTAACGGGTA
GTATTCTAAATTTTCTTGATTTCTTCTTTTTTTCATTTAACGTTTCTCTG
AGTTTTTGGTTTTTTTCCCTTTTTTTTTTTTTTTTTTTACGTCATTTTAT
CCTTACCATTTCCCTACTTTTTCTTTTTCCTTCAATTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_e17.b1 MSMg01no457_e17.b1 CHROMAT_FILE:
MSMg01no457_e17.b1 PHD_FILE: MSMg01no457_e17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:27 2005
         (459 letters)



>mm_chr11_101883249_101884107
          Length = 859

 Score =  818 bits (423), Expect = 0.0
 Identities = 450/459 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacttctttccatctgataaactccctctctgcccagtccattgccactgaaagtaaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacttctttccatctgataaactccctctctgcccagtccattgccactgaaagtaaggt 260

                                                                       
Query: 61  gaaaccagccctcatctgttagcctctaggagagtggctgtgcctgcactgcctcagtac 120
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaccagccctcatttgctagcctctaggagagtggctgtgcctgcactgcctcagtac 320

                                                                       
Query: 121 gcaaaactagagcggcaaactttgtctgtaaaggacggagtagatatcgtaagcttcgtg 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagaactagagcggcaaactttgtctgtaaaggacggagtagatatcgtaagcttcgtg 380

                                                                       
Query: 181 gtggggcaatcactcagctcttcatgacaaaggaataagcacgaccttgcttttaaaaac 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgaggcaatcactcagctcttcatgacaaaggaataagcacgaccttgcttttaaaaac 440

                                                                       
Query: 241 aacaacaggtgtctggcgtggtggcgcatgcctttaatcccagcactcgggaggcagagg 300
           ||||||||||| | ||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 441 aacaacaggtgccaggcgtggtgacacacgcctttaatcccagcactcgggaggcagagg 500

                                                                       
Query: 301 caggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagcctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcggatttctgagttcgaggccagcctggtctacagagtgagttccaggacagcctg 560

                                                                       
Query: 361 ggctatgcagagaaaccctgtcttggaaaaaacaacaacaacaacaacagggggctggag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggctatgcagagaaaccctgtcttggaaaaaacaacaacaacaacaacagggggctggag 620

                                                  
Query: 421 agatggctcagcgattaagagcactgactgctctactga 459
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agatggctcagcgattaagagcactgactgctctactga 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no457_e17.g1 MSMg01no457_e17.g1 CHROMAT_FILE:
MSMg01no457_e17.g1 PHD_FILE: MSMg01no457_e17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:27 2005
         (244 letters)



>mm_chr11_102058932_102059575
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atataaatgttggatcctgctttagaatttatttgcctgtgttaaatttcttaccagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atataaatgttggatcctgctttagaatttatttgcctgtgttaaatttcttaccagcct 385

                                                                       
Query: 61  gagtttcccttgcacttcagtggaatgggttctgcagggagataaaccatattcatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagtttcccttgcacttcagtggaatgggttctgcagggagataaaccatattcatccca 325

                                                                       
Query: 121 tggctgtagagccaggattcagtgtcacagacccggagccactggtgggctcatcttcat 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 tggctgtagagccagaattcagtgtcacagacccggagccactggtgggctcatcttcag 265

                                                                       
Query: 181 agctaatggtagggtgggtgtgggagagttggcatgctgagctttggattagagcttaga 240
           ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 264 agctaatggtagggtgggtgtggaagagctggcatgctgagctttggattagagcttaga 205

               
Query: 241 ctgt 244
           ||||
Sbjct: 204 ctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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