BAC Information

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BAC

Clone NameMSMg01-458D09
Chromosome11 (Build37)
Map Location 11,610,759 - 11,775,076
singlet/doubletdoublet
Overlap geneIkzf1, Fignl1, Ddc
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
Downstream geneGrb10, Cobl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458D09.T7 (MSMg01no458_d09.b1)MSMg01-458D09.TJ (MSMg01no458_d09.g1)
ACCAG544094AG544095
length741739
length of high quality
(start - end)
193 (130 - 322)581 (77 - 657)
definitionCHROMAT_FILE: MSMg01no458_d09.b1 PHD_FILE: MSMg01no458_d09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:44 2005CHROMAT_FILE: MSMg01no458_d09.g1 PHD_FILE: MSMg01no458_d09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,774,890 - 11,775,076)(11,610,759 - 11,611,345)
sequence
GTTTTCGTCXXXXXXXXXXXXXXXXXXAGATCACTATTTCTCACCGAGGG
CGGNAATCTCAGCATTACATAAAAAACCAGCTGAGCTGACTGCTTTACCA
CATGGCACCTGATTTTCTTCCAGCTGCCATACTGAGGGGCTGGGCTAGTG
GGAGTCACAGCTCATGGGAAGAGCTGAGATGGCCTTCTTGCTGAACTGTT
GCCATTGCTCTTAGGTCAGGCACTTGGGGCCTTCTTCTATAGACCAAGCC
TAGTATGAGTGTACCCTTTTCTTTCATTAAATGTTGTTGTGGCAGGTTTC
ACTGGTGTCATTCTGCGGTTCCATAGCTCACTGCATATATTTGTCTGGGG
ACCCAAAATCATCCTCTGACTTATCTGCTTTTCTAGGATGGTCTTGGTTG
AGGAAGAGCCTGACACACACGTTGTGTTGCTTGATAGCTGTGGTTCATAA
CATGGAATGTTGGCTCCTATACTGAGAATTAGCATTAGCTTGGCTGCAGT
GGCACCCAGCAGGATGGGGATAACCATCTAACCAGCAGTGGGAAAGTCCT
CAGTTCCTCTTGTCATCAATGTGTCATAATTCCAGAATGCACAAGAGCAG
CCTGGTCACCATGTTGTGCCCCTTTAGGAAAGACCCAAATGAAAATGGAG
GCTCTTTTTCTTTTTTGCCTGGATCTGAAAGGACCCAGCTAGCCTCTTTT
CTGGGTGCCAATGAAAGTAAATAGGCCCTGACACCCTTTCC
TCTCGATGATATGAGTAGGCCTGGGGGNCGCCTGTTCAAACACTGTAGGT
GACCTATAGAATTATCAGAAGAAATCCAGGCTAAACATACAAACACCTAG
AAAAAGCCAAGCCAGTATGAGGCTTGGCAGAGTCCAAGGGAAAAGCCAAT
AGAAGGATAGGCCTGCTCAAGGCTGAGCTGAAAATGGGATGTTGCTAAGC
AGGGGAGGCTAAGTCCATGACTGAGCACTGGACAATCTGTGCAGAACCCA
GACTGAAGGAAATGGGATTGAACTCTGAGAAGGTGCATTCTAGGATATGC
ACCCTTCAGTCTCCCTTTGTTTGTATTTCAATCTGATATTCATCTGCCAG
ATCTGAGAGAGGCTGACCCTGTACAGCCTCTCAGTGAGTGCTTGCACCTA
ACTTTTACTCTTCTTAGCTTAGATGAGAAGAGAGAAAACAGATACAAAAG
AAAATCTACATTTTTCATTCTTCTAGGAATCCTGAAATAGTGACGTGTAT
AAAAATATTGATCTTGGTTTTTATTTTGTTTGGCTGTCTCCTCCTCCTCC
TCTTCCTCTTTCTCCTCCTCTTCCTCCTCCTCCTTCCCCTCCTCCCCCTC
CTCTTCCTCCTTCCCCTCTTCCTGTTCTTTTTTCTCCTCCTCTTCCCCCT
CTTTCCTTCTCCTCCTGCTCTTTCTCCTCTTTCATTTCTTCTTCTTCCTC
CTCCTCCTCACCCTTCTTCCGGAATCCTTACATTGACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_d09.b1 MSMg01no458_d09.b1 CHROMAT_FILE:
MSMg01no458_d09.b1 PHD_FILE: MSMg01no458_d09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
         (193 letters)



>mm_chr11_11774690_11775282
          Length = 593

 Score =  339 bits (175), Expect = 9e-98
 Identities = 184/187 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgaggggctgggctagtgggagtcacagctcatgggaagagctgagatggccttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tactgaggggctgggctagtgggagtcacagctcatgggaagagctgagatggccttctt 328

                                                                       
Query: 61  gctgaactgttgccattgctcttaggtcaggcacttggggccttcttctatagaccaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctgaactgttgccattgctcttaggtcaggcacttggggccttcttctatagaccaagc 268

                                                                       
Query: 121 ctagtatgagtgtacccttttctttcattaaatgttgttgtggcaggtttcactggtgtc 180
           |||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 267 ctaggatgagtgtatccttttctttcattaaatgttgttgtggcaggtttcattggtgtc 208

                  
Query: 181 attctgc 187
           |||||||
Sbjct: 207 attctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no458_d09.g1 MSMg01no458_d09.g1 CHROMAT_FILE:
MSMg01no458_d09.g1 PHD_FILE: MSMg01no458_d09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:44 2005
         (581 letters)



>mm_chr11_11610559_11611539
          Length = 981

 Score = 1011 bits (523), Expect = 0.0
 Identities = 569/589 (96%), Gaps = 10/589 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggctaaacat--acaaacacctagaaaaagccaagccagtatgaggcttggcagagtc 58
           ||||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggctaa--atgcacaaacacctagaaaaagccaagccagtatgaggcttggcagagtc 258

                                                                       
Query: 59  caagggaaaagccaatagaaggataggcctgctcaaggctgagctgaaaatgggatgttg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 caagggaaaagccaatagaaggataggcctgctcaaggctgagctgaaaatgggatgttg 318

                                                                       
Query: 119 ctaagcaggggaggctaagtccatgactgagcactggacaatctgtgcagaacccagact 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 319 ctaagcaggggaggctaagtccatgactgagcactggacaatctgtgcagaacccagaca 378

                                                                       
Query: 179 gaaggaaatgggattgaactctgagaaggtgcattctaggatatgcacccttcagtctcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gaaggaaatgggattgaactctgagaaggtgcattctaggatatgcacccttcagtctcc 438

                                                                       
Query: 239 ctttgtttgtatttcaatctgatattcatctgccagatctgagagaggctgaccctgtac 298
           |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctttgagtgtatctcaatctgatattcatctgccagatctgagagaggctgaccctgtac 498

                                                                       
Query: 299 agcctctcagtgagtgcttgcacctaacttttactcttcttagcttagatgagaagagag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agcctctcagtgagtgcttgcacctaacttttactcttcttagcttagatgagaagagag 558

                                                                       
Query: 359 aaaacagatacaaaagaaaatctacatttttcattcttctaggaatcctgaaatagtgac 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 559 aaaacagatacaaaagaaaatctacatttttcattcttctaggaatcctgaaatagtgaa 618

                                                                       
Query: 419 gtgtataaaaatattgatcttggtttttattttgtttggctgtctcctcctcctcctc-- 476
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  
Sbjct: 619 gtgtataaaaatattgatcttggtttttattttgtttggttgtctcctcctcctcctcct 678

                                                                       
Query: 477 ----ttcctctttctcctcctcttcctcctcctccttcccctcctccccctcctcttcct 532
               |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 cctcttcctcttcctcctcctcttcttcctcctccttcccctcctccccctcctcttcct 738

                                                            
Query: 533 ccttcccctcttcctgttcttttttctcctcctcttccccctctttcct 581
           ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 739 cctccccctcttcctgttcttttttctcctcctcttcctcctctttcct 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)