BAC Information

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BAC

Clone NameMSMg01-458M10
Chromosome11 (Build37)
Map Location 47,394,381 - 47,394,708
singlet/doubletsinglet
Overlap genenone
Upstream geneBC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647, LOC192895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M10.T7 (MSMg01no458_m10.b1)MSMg01-458M10.TJ (MSMg01no458_m10.g1)
ACCAG544526AG544527
length960748
length of high quality
(start - end)
---331 (328 - 658)
definitionCHROMAT_FILE: MSMg01no458_m10.b1 PHD_FILE: MSMg01no458_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005CHROMAT_FILE: MSMg01no458_m10.g1 PHD_FILE: MSMg01no458_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACAATTATACTCTTGCTAGCTACGTGCTCGTACTTTCCCAAGTGGGGTGG
ACCCCGCGCATTCCCCCCCGGCGGGGGACAGAGCTGCGACGCAGAAGACG
GAGGAGCGCGGAGCGGGCCCGATAGACGCTCACCCCTGCACAGATATTCA
CACCACTTAGACCGGCCGACCAGGCGTGAGTGGGGAGGGGGACGGAGATC
ATTGCCTATAATTCCTTCATCCCCAACTCCCAACCCCTAGTGAACGACCC
CAGCGCCGGGCACCAAGACTTGAGACTACTACTAGAACTCCAATCGAATC
CAACACACTAATAAAATAAATGAGNTTGCATGTTACTTGACGGTACATAT
TGTCGTCAACAATGCATCATATGCTATAAGTAGATTGACGGACGAGACAA
AACAAATGACACAAGAACACCTGCTTTCCACTCTACGGGAAAGGATACAT
CCATCACATCCATATATACATCGTCACTCCAACACCCACTTCCCTCTCCA
TCCAGACCATGACCCTGCATAATTCAAGATGGGAATTAACGCACGATATC
CTAATCAAGAAGACCCGAACCTCAACCGAAACCCTCACAGCGATTAACCT
GGCACCTAGACCCGGCGCCAACTCTCAGCCACAGAACGACCAACACTGCG
TAGAATAGATACGGAACAACGCACAGCATCGAACAGTCACACAACGCGAC
TAGCGTGGAATATCGGACGCTAATTATCCACAAAGAATACCAACTCAGTA
CACCCAAGAGACATGCATATCACCGAATTCTAGCGTGACTTGTGCATCAG
TGATGTTACTCGAGGACTCACCCCGCACCGTCTTGCCTGCAACAAGTATG
AGTCGAGACGACACGATGAGCGTATCCACAATCAAATGTGGTCACGCACT
CGTCAGAAATCACCCGCGATTATTGAACCACACGCTCACGAACACATATT
TGTGCAATGN
CCGATGATGTGTGTAGCCTGGGGGNCGCCTGTTTTCAAAATTTAGGNGAA
CTATAGAAGTTTCCGCAAAACTCAGGGNTATGNGAACAAAAAAAGGGTGG
AGATGTGCTTAGGGTTGGAAAGCATAGGACCAGAGTTGAAAAAAAACTTT
GGATCTGAAGTTGTTTTCTCATTAGTTTGCTTTGTGTGTTTAGTATGGTG
CCTTCTCCTTGGGACTCTCTTTTCTCACTGGGCTAAACCACAGGTCATCT
TTTATTTTAAACTACAAAAATAAAATGTTTTCCATCCTGCTTTACTAATA
GGATTTTGTTGTTGTCTANGATTATTTAAGAAATTGAGTACAGTGCTTTA
ACAAAATATCTATGAATGTAGCCTGACACATTGGCAAATTACATCATATT
CCAGTGTCAAAAGGCTAGATACCTCTGACAGACTTTTGGAGGATTATAGG
TATTATAGCTTCATCTGCTACCATGAAATTCTTTATTGTCTGTAAATATC
AAGACATTCAGATTTTTCTAAGAAAAATTTTTTCTATAAATGTATCCATT
AAGATGTTTATGGTGAAGAGGTGGCCACAGACATATATCATTCTCTATTG
TGATGATAGATTCTTCAACTGATTTTATTTCTTTTGCCCATTGGAATTAT
ATACTCTATGTGTGATCTCATGACCTCATGTGCCATCATTTCATTTCCCT
CCATTGTCTAGATCTTTTACATCTCCTGTGTAATGGAACTACTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m10.g1 MSMg01no458_m10.g1 CHROMAT_FILE:
MSMg01no458_m10.g1 PHD_FILE: MSMg01no458_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:28 2005
         (331 letters)



>mm_chr11_47394181_47394908
          Length = 728

 Score =  534 bits (276), Expect = e-156
 Identities = 317/332 (95%), Gaps = 5/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaattgagtacagtgctttaacaaaatatctatgaatgtagcctgacacattggcaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 201 aagaaattgagtacagtgctttaacaaaatagctatgaatgtagcctgacacattggtaa 260

                                                                       
Query: 61  attacatcatattccagtgtcaaaaggctagatacctctgacagacttttggaggattat 120
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 261 attacatcatattccagtgtcaaaaggctagatacctcagacagacttttagaggattat 320

                                                                       
Query: 121 aggtattatagcttcatctgctaccatgaaattctttattgtctgtaaatatcaagacat 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtattatagcatcatctgctaccatgaaattctttattgtctgtaaatatcaagacat 380

                                                                       
Query: 181 tcagatttttctaagaaaaat-tttttctataaatgtatccattaagatgtttatggtga 239
           |||||||||||||||| |  | ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatttttctaagata--tctttttctataaatgtatccattaagatgtttatggtga 438

                                                                       
Query: 240 agaggtggccacagacatatatcattctctattgtgatgatagattcttcaactgatttt 299
           |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 439 agaggtggccacaggcatatatcattctctaatgtgatgatagattcttcaactgatttt 498

                                           
Query: 300 atttcttttgcccattggaattatatactcta 331
             ||||||||||||||| ||| ||||||||||
Sbjct: 499 --ttcttttgcccattgtaatcatatactcta 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 728
Length adjustment: 9
Effective length of query: 322
Effective length of database: 719
Effective search space:   231518
Effective search space used:   231518
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)