BAC Information

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BAC

Clone NameMSMg01-458M12
Chromosome11 (Build37)
Map Location 86,418,503 - 86,418,625
singlet/doubletsinglet
Overlap geneTmem49
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687
Downstream genePtrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458M12.T7 (MSMg01no458_m12.b1)MSMg01-458M12.TJ (MSMg01no458_m12.g1)
ACCAG544530AG544531
length755727
length of high quality
(start - end)
243 (79 - 321)123 (129 - 251)
definitionCHROMAT_FILE: MSMg01no458_m12.b1 PHD_FILE: MSMg01no458_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005CHROMAT_FILE: MSMg01no458_m12.g1 PHD_FILE: MSMg01no458_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAACAGCGC
GGNAATCTAACCTCTAACGATAAACACAGGGAACCCCAAGAGCAGGCTGG
CTGGTAAGACTAGCTGTATGTGCGCGCTCTAGGTTTGATCCTGCCTCAAT
GAATTAAGGTGGAAGAGCCATCAATAATGATTGCTGACATCCATCTTGGG
CCTCCACACATTTGCACACACATGTTCATCTTCACCCTGCACATGCATGT
GTGCTTATTCACACACAAACGTTCACACAAGCATGAATGTATAATCACAC
ACATGAAAATACATGTGCATATTGCTCNCTTTTTCTCCCTCCTCACCAGG
AGTAATTTAAAAAGCAGGTTGCAGGAGCTGGAACAACAGCAGCAAAGTGC
TTACTCTCCAAGCCTGAGGGCCTGGGTTCATAAGACCCTAAGACCTAGGG
TGAAGAGGCAGATGTGGTGGCACATGCTTGTAATCTTAGTGTTGGGCAGA
CAGAGACAGGAGGATTCCTGAGGCTCGCCAGCTAGCCACCCTGACCTAAT
TGGTAAGCTTCAGGCTAGTGAGAAACCCTGCCTCCAAAGAAATGCCTGGA
AATTTTGAAGGTGTCTCTTGAGTTGATCCTCGGGCACATGCCTACACCCA
CAACCCCATTTTTCTGTTTTTTTACCATAAAAAATAAACCAACCTATTAA
TTAAACCAATAAAATCCCTAAACTTCCCGGGTCAGTTTATGAAAGCACAT
GGCCG
CATGTCTATGCAGTGGGAGGCCTGGNGGGCGCCTGTTTCTACCCTCTNGG
NGAANNANAGAAGTATCAACACACCTCGGAANAAGCCCGGAGGNNGAAGN
CCTTCTACCTACTATGTATTGACCCTGATAGCAAACCCATTTGTCTTCCT
GAGGCATGGATCTGGATCCTTTTCCTGACTGTGGAATATGTTTACTGTAT
TCCACTGTACATAGTAAATTGCCTTAAGAAGGCATGTCACTTGATGTGCA
TTCTTTTGTAGCTTAGAACAAGCCTTTCCCGTTCCCTGAGTAGGCAGCAC
TAGTGAGCAATATAAATTTTTTTGTCTTTTCCAGAGNCCAGAGAAACACC
CACACACAAATTCCTCTGCACTCTACTAAAGCCCATCTCTCTGTTTGCTC
TTCTTTCGTCCTTTTTTCCCCTCAGCTTAACTTTAGACAGCTTTCCAATA
AGTTATAAGTATAACTTGCTGTCTGTTAGTCTTCCTTGAAAAATTCCCAG
CAGCACAATCTACTGTGTTGGATCAAAACTTTCCTGTTCCCTGGGTAGAT
TGAACTTCTCTGCCTAGAAGAGGATTCTTATCTTGTTCCCAAATGATGAC
AACATACTAACAAGATTGTCTATTTGTGCGCATCTTACTTACTGCGGTTT
TTGTTTTTTTGCCTCCCCCTGATAGCACATCCCCATACCCAATCTCGTTT
TGTCGAGCTTAAGGTCCAAAATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_m12.g1 MSMg01no458_m12.g1 CHROMAT_FILE:
MSMg01no458_m12.g1 PHD_FILE: MSMg01no458_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:28 2005
         (123 letters)



>mm_chr11_86418303_86418825
          Length = 523

 Score =  230 bits (119), Expect = 2e-65
 Identities = 122/123 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcaaacccatttgtcttcctgaggcatggatctggatccttttcctgactgtggaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagcaaacccatttgtcttcctgaggcatggatctggatccttttcctgactgtggaata 264

                                                                       
Query: 61  tgtttactgtattccactgtacatagtaaattgccttaagaaggcatgtcacttgatgtg 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgtttactgtgttccactgtacatagtaaattgccttaagaaggcatgtcacttgatgtg 204

              
Query: 121 cat 123
           |||
Sbjct: 203 cat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 523
Length adjustment: 8
Effective length of query: 115
Effective length of database: 515
Effective search space:    59225
Effective search space used:    59225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)