BAC Information

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BAC

Clone NameMSMg01-459I05
Chromosome11 (Build37)
Map Location 85,078,371 - 85,078,763
singlet/doubletsinglet
Overlap genenone
Upstream geneAcaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik
Downstream genePpm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459I05.T7 (MSMg01no459_i05.b1)MSMg01-459I05.TJ (MSMg01no459_i05.g1)
ACCAG545088AG545089
length768743
length of high quality
(start - end)
274 (45 - 318)409 (76 - 484)
definitionCHROMAT_FILE: MSMg01no459_i05.b1 PHD_FILE: MSMg01no459_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:28 2005CHROMAT_FILE: MSMg01no459_i05.g1 PHD_FILE: MSMg01no459_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCATGTTTTACACCCCTTCCCCAACCAACCAATACAAAGTTCATA
TTTAAGAACTTCACATTAGAGTTGCCAAAAGATTTTTTTCATAAAACACA
TATTTTTATAGGAAATTTACAGGTCTGTGATGGGATTCATGCACAGCTAT
CTTGAGCAGTGGGTTGGACATGTCTGCCAGAGGAAGGGCACTAGAGTTCA
AATGCATAACAACTCAAGTTTATACAAAGTAATAAGGAACATAACAAGTA
AAAGGTGCAAAGGGAATACTTATTATTAAACTTTCATGAAAGAATCTTGG
AAAATGGGAATTCACATGACAAAAAATTTTTTTAAAAAAAATCAACAGAG
AAAAGCCTGCCTAGACATGTACATCTGTAACATCAGCACTAGGGAATCAG
ACGCACGATTGAGTATCAAAGCATGAGGCTAGGCAGTACTAAGGTAGCAA
GATTCTGTCTAAACTAATTAGCCTACTTTACCTATCAAGAGACCTGATGA
ATACGCCCAATGGTTGGAAAGAACGCAATAATTATGCTTGGCTACGTCCG
TGCTTCTTTTTTTTCCTTATGATTTTATTATCTTTTCTACTACCCATATA
TGCCGCATTTATTTGCATTTGGTCCTTCGTCCCCCTCCTTTAACCACTTT
TACATCCTCTTTAATAATTTTTGCCACCCCCAATTCCGCCCCCACCTGGC
GTATTTTATTCTCCTTTN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGA
AAGCCTGTCTCANAAAAAAAAAAAAAAAAAAAAAAAAAAACTTAGCACTG
AGAAGCAGAGGCAGGCAGATCTCTGAGTTCGAGACCAGCCTGGACTACAG
AGTTCCAGGACAGGCAGGGCTACACAGAGAAAACCTGTCTCAAAAATACA
AAAAAGCAAAGCCAAACAAACAAATAACCCCCCCACACACACACACACAC
AAGCAACCCAACTGAAGAGCTATGGAACACAGTCCAGATTCACTCATCAG
AGCAGCCAGAGATGGACCATTTCTAGTGGAGGGGAATCCAAGAATGAGAG
GCCACTGGCCCGCACAACCGTGACCACTGAACTGGTGAGAGAATGGATTC
TGGCAAGAGGAAAGAAATTCCTACATAGGCTGGAACCACGGGTGTCAGAG
GTCGAGCTGAGTTTCCACCTGGCCAGGACCAGGCCTCCCCAGCCTTATCC
CCAGACAGACCGATTTGACTCACCCCNNNCCCNCNNNNTTTTTCTTTTGT
TTTTCGATTCCTACCGTTCCCACCTTCCCCCCCTTACTTCTCTCCCTTCT
GCCCCTTTCTTCCACTTTCCTCTCTTCTTTTCTTTCTCCGCTAATGATAC
CCTTCTTAATTTTGCACTATCTCTCCCTCTTCTTTTATCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_i05.g1 MSMg01no459_i05.g1 CHROMAT_FILE:
MSMg01no459_i05.g1 PHD_FILE: MSMg01no459_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:28 2005
         (409 letters)



>mm_chr11_85077993_85078798
          Length = 806

 Score =  690 bits (357), Expect = 0.0
 Identities = 389/409 (95%), Gaps = 16/409 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggctacacagagaaagcctgtctcanaaaaaaaaaaaaaaaaaaaaaa 60
           ||||||||||||| ||||||||||||||||||||||              ||||||||||
Sbjct: 771 caggacagccaggtctacacagagaaagcctgtctc-------------gaaaaaaaaaa 725

                                                                       
Query: 61  aaaaacttagcactgagaagcagaggcaggcagatctctgagttcgagaccagcctggac 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaaatcttagcactgagaagcagaggcaggcagatctctgagttcgagaccagcctggac 665

                                                                       
Query: 121 tacagagttccaggacaggcagggctacacagagaaaacctgtctcaaaaatacaaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tacagagttccaggacaggcagggctacacagagaaaacctgtctcaaaaatacaaaaaa 605

                                                                       
Query: 181 gcaaagccaaacaaacaaataacccccccacacacacacacacacaagcaacccaactga 240
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 604 gcaaagccaaacaaacaaataaccccccc---cacacacacacacaagcaacccaactga 548

                                                                       
Query: 241 agagctatggaacacagtccagattcactcatcagagcagccagagatggaccatttcta 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agagctatggaacacagtcctgattcactcatcagagcagccagagatggaccatttcta 488

                                                                       
Query: 301 gtggaggggaatccaagaatgagaggccactggcccgcacaaccgtgaccactgaactgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtggaggggaatccaagaatgagaggccactggcccgcacaaccgtgaccactgaactgg 428

                                                            
Query: 361 tgagagaatggattctggcaagaggaaagaaattcctacataggctgga 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgagagaatggattctggcaagaggaaagaaattcctacataggctgga 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 806
Length adjustment: 9
Effective length of query: 400
Effective length of database: 797
Effective search space:   318800
Effective search space used:   318800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)