BAC Information

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BAC

Clone NameMSMg01-459N01
Chromosome11 (Build37)
Map Location 57,334,324 - 57,334,884
singlet/doubletsinglet
Overlap geneMfap3
Upstream geneGria1, LOC667878, 1810073G14Rik
Downstream geneGalnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459N01.T7 (MSMg01no459_n01.b1)MSMg01-459N01.TJ (MSMg01no459_n01.g1)
ACCAG545319AG545320
length740738
length of high quality
(start - end)
565 (46 - 610)504 (77 - 580)
definitionCHROMAT_FILE: MSMg01no459_n01.b1 PHD_FILE: MSMg01no459_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:52 2005CHROMAT_FILE: MSMg01no459_n01.g1 PHD_FILE: MSMg01no459_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:32:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTCTCCTGTTTAGCTGTAGAACTCTTAGCTCCTCCAGCACCAT
GTCTGCCTGTATGCTGCCACGCTTCCCCGCCATAATGGACTGAATTTCTG
AAACTAAGCCAGAGCCAATTAAATGTTGTCCTTTATGCTTTGGTTATGGT
GCCTCTTCCCAGAAATAAACTCCTAAGAAACCATCCTTTTTAGAGCTTTG
TCTAAATGCCAGTATCTGACTTGTATCCTTTTTTGGCACAGCAGTGACTG
GAAGCGGGTGGCAGGATGTCTGAGAAACGGGCTTAGATTCAGGACCTTCC
CACCTCATTTTCTTTCCTCTGTAGTCTGAAACTAAGGAAGTTGCCACTGT
ATCTTTAACTCAGTAGATAAAGCCCATCACGGTAACCCCATACACAGCTT
AGAGGGAATCCACTGAAGCCTTCCAGTTTTGTAACGCCAAAATTATAGGA
TTATATAATTTAGTGGTCAGAAGAATGGGCTCTGGAGTTACACATACCTG
GTCCTTGTTCTGAGTGAAGCCCAGTCTGGAAAAGCCTTTGTTTTCACATC
TACTGAATGGGGTTAGTAACGGTAACAATCCTGGAATGTCTGGAAGCATG
CTTGGATGTAGGTACATTACCAATACATGCTATTGTCAATATTACACTTT
TGAAGAACTTTTCAGTTACGTCCCACTGTATCTGCCCAAA
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAATACATAGTTACCACACCCTC
ATAAGAATCAGAGAGGGAAATAGAAATCAAGGAACTAAACACCCACCCAA
CAAAGACAAGATCAGATATCAGGACCAAGAATTGCAATCATCCCAAAACC
AGATGTCTAGATGCCAGCATAAAAACACAGTAAATAACTGCCATGATAAT
ATGTTCCCATTAGAGCCCAGAAACTTTGCCACAGTATCTCTGAGAATTGC
ACCATAGCTGAAGCAAAAGACAAATATCTTTTTTTTAATTAGGTATTTTC
CTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCTG
ACTCCCCTACCCACCCACTCCCACTTTTGACAAATATCTTAAAATAACCT
TTATGAATATGATAGAGGTCCTTAAAGAGGAAATTAATAAATTCCTCAAC
TATATCTACAAACACAAACAATGGGAGTAAATTAATAAAACAGTTCAAGA
TCTGAAAGTAGAATCAACAAAGAAAATTCAAACTGAGAGAAATGTAGAAA
TGAAAAATTTAAGAACTTCAGATATAAGCCTCACCAATAGAATATAATGA
ATGGAANAGAGAATACCAGGCATTAAAAGCACAATAGAAGAAATGAACAC
CTCAGTCTAAAATCGTGGTAAATTTAAACCATCCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_n01.b1 MSMg01no459_n01.b1 CHROMAT_FILE:
MSMg01no459_n01.b1 PHD_FILE: MSMg01no459_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:52 2005
         (565 letters)



>mm_chr11_57334050_57335014
          Length = 965

 Score = 1064 bits (550), Expect = 0.0
 Identities = 559/562 (99%), Gaps = 1/562 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccagtctcctgtttagctgtagaactcttagctcctccagcaccatgtctgcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 ggaattccagtctcctgtttagctgtagaactcttagctcctccagcaccatgtctgcct 776

                                                                       
Query: 64  gtatgctgccacgcttccccgccataatggactgaatttctgaaactaagccagagccaa 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gtatgctgccacgctt-cccgccataatggactgaatttctgaaactaagccagagccaa 717

                                                                       
Query: 124 ttaaatgttgtcctttatgctttggttatggtgcctcttcccagaaataaactcctaaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ttaaatgttgtcctttatgctttggttatggtgcctcttcccagaaataaactcctaaga 657

                                                                       
Query: 184 aaccatcctttttagagctttgtctaaatgccagtatctgacttgtatccttttttggca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aaccatcctttttagagctttgtctaaatgccagtatctgacttgtatccttttttggca 597

                                                                       
Query: 244 cagcagtgactggaagcgggtggcaggatgtctgagaaacgggcttagattcaggacctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cagcagtgactggaagcgggtggcaggatgtctgagaaacgggcttagattcaggacctt 537

                                                                       
Query: 304 cccacctcattttctttcctctgtagtctgaaactaaggaagttgccactgtatctttaa 363
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 536 cccacctcattttctttcctctgtagtctgaaattaaggaagttgccactgtatctttaa 477

                                                                       
Query: 364 ctcagtagataaagcccatcacggtaaccccatacacagcttagagggaatccactgaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctcagtagataaagcccatcacggtaaccccatacacagcttagagggaatccactgaag 417

                                                                       
Query: 424 ccttccagttttgtaacgccaaaattataggattatataatttagtggtcagaagaatgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccttccagttttgtaacgccaaaattataggattatataatttagtggtcagaagaatgg 357

                                                                       
Query: 484 gctctggagttacacatacctggtccttgttctgagtgaagcccagtctggaaaagcctt 543
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gctctggagttacacgtacctggtccttgttctgagtgaagcccagtctggaaaagcctt 297

                                 
Query: 544 tgttttcacatctactgaatgg 565
           ||||||||||||||||||||||
Sbjct: 296 tgttttcacatctactgaatgg 275


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)