TTTCCTCTATAATTTGCGAGCGCTAAACGACTCACATCAGAAAGAGGATC
CGCGGAATTCTAATTTCTGCAGAACAGAAAGTGATTGAAGTCCATATAAT
TATGACAAATAAAGGAAGGCTGAGTGTCTTGGAACTGAAATAGCACCAGC
AAACCCCTCTGCCTCATTCTACTATAGATATGTTGTCCTTATATATTCTT
TCCATTTGTACTTTGAGGATGTGGGTTTAGCATATAGATTTCATTCTTAT
ACCAAAACAGCATTATGTATATAAGATATATACGAAATATATATATGTGT
GTGTGTGTGTGTGTGTTTTTTTTTCCCCTNTTTCTCCTCTATTCTTGCGT
AAACTTTTTTTTCCCCTCCTATTATCAATTTTCTTCCCCTCCTTTTCTCT
CTATACATTTCCCACTCTTCCCCCTTTACCCTTTTACTTCTCCCCTCTTT
TATTCCTTAAACCAACCCTCCATTTTCCTTTTTTTTCCTCTAACCCCCCC
CCTTTCTTTCCTTCTTTTCCCCTTTTTTTCCCCTCCTACCATTACTACCC
TTTCCCCTCCTCCCCTTTCCTCATCTTACCTCCCCCACTCTTTCTCCCTC
CTTTCTCCTCCTTCCTTATTTTCCCTACTTTCCTTTTTTTTTCTCCCTCT
CTTTTTACCTTCCATCCTTTTTTCCTTTCTATATCTGTTCATTGTAACTC
CTTACTCCCTTTCTCTTTCCCCCCTTTTTCTCTTAACTTCATTTTTTATT
CCCCCTTTTTCTCCCCCCACCTTCTTTTATTTTTTTTTTT

CTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAATCAAGAATGTCCTT
CATGTCTTGAGAGGTATTTTAGGAAAAGAAGTATTAAGATGTATGTTACT
TAGTGGGCCATTTCAACTATTTACTACTATTTTGGGGTGGGGGTAATTGT
TATAGTTTGCATATTACTACAGGCCCTTCTCAGGGTCACCGTATAGGGTT
TTTTCCATGGCTGTAACGACTACTCCCGCCTCTTGGCCCCTCCACGCTAT
CCCCTATATTTTCCCTTTTTTTTTTTCTGACCCACCCCACGATTTCTCAT
GCGCCCTTTTTTTTGTTTTTCCCTTCTTCCCGCCCGCCCGGTCTGCTGTT
TTCCCACCCCCCCAGTGTTTTTTTCCCCCACTATTTTACTCTCTTTCTTT
GTTTTCTCCGTCCTCTCTCCGTCGTTCTCCTTCTCTACCCTCTACGTGGC
TGATTCTTCTCTTTTTTTTCTTACTGCCGTCATTCGATCTCCTTCCTCTC
TTCTCCCCCCCCCTTTTCTCCATTCATGCTTCCCCTTTTTTCTTTTTCTT
ATACTTCTTTTTTTCCCCCCCCCTTTTTTTACCTTTCCCAGTAATCGTTT
TCACTTTTGTTTTCTCTCATTCTTCTCTCTTTTTTTTTCTCCCTTTTCTT
CCCACCCCACTTCCCTTTTTCTCCCTATGTTTCTTTCCTCCCCTTTACCT
CTCTTTTATTTATTTTCTTTCATTATCTCTACCCTTTCTTTTTTCCTAN

Query= MSMg01no459_o07.b1 MSMg01no459_o07.b1 CHROMAT_FILE:
MSMg01no459_o07.b1 PHD_FILE: MSMg01no459_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:59 2005
         (242 letters)



>mm_chr11_41330926_41331567
          Length = 642

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacagaaagtgattgaagtccatataattatgacaaataaaggaaggctgagtgtcttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aacagaaagtgattgaagtccatataattatgacaaataaaggaaggctgagtgtcttgg 363

                                                                       
Query: 61  aactgaaatagcaccagcaaacccctctgcctcattctactatagatatgttgtccttat 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aactgaaatggcaccagcaaacccctctgcctcattctactatagatatgttgtccttat 303

                                                                       
Query: 121 atattctttccatttgtactttgaggatgtgggtttagcatatagatttcattcttatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atattctttccatttgtactttgaggatgtgggtttagcatatagatttcattcttatac 243

                                                     
Query: 181 caaaacagcattatgtatataagatatatacgaaatatatat 222
           ||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 242 caaaacagcattatgtatataagttatatatgaaatatatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no459_o07.g1 MSMg01no459_o07.g1 CHROMAT_FILE:
MSMg01no459_o07.g1 PHD_FILE: MSMg01no459_o07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:32:59 2005
         (128 letters)



>mm_chr11_41156515_41157042
          Length = 528

 Score =  248 bits (128), Expect = 1e-70
 Identities = 128/128 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatcaagaatgtccttcatgtcttgagaggtattttaggaaaagaagtattaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatcaagaatgtccttcatgtcttgagaggtattttaggaaaagaagtattaagatg 260

                                                                       
Query: 61  tatgttacttagtgggccatttcaactatttactactattttggggtgggggtaattgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgttacttagtgggccatttcaactatttactactattttggggtgggggtaattgtt 320

                   
Query: 121 atagtttg 128
           ||||||||
Sbjct: 321 atagtttg 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)