BAC Information

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BAC

Clone NameMSMg01-459O14
Chromosome11 (Build37)
Map Location 103,612,336 - 103,612,606
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b
Downstream geneWnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-459O14.T7 (MSMg01no459_o14.b1)MSMg01-459O14.TJ (MSMg01no459_o14.g1)
ACCAG545392AG545393
length821823
length of high quality
(start - end)
191 (41 - 231)276 (71 - 346)
definitionCHROMAT_FILE: MSMg01no459_o14.b1 PHD_FILE: MSMg01no459_o14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:00 2005CHROMAT_FILE: MSMg01no459_o14.g1 PHD_FILE: MSMg01no459_o14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAACATTTCTAAGCTGCCCTGTTTAGATGCTAGGAACTGAACCCGGGTC
TATGCTCTTAACTTCTGGGCTGTCTCTCCAGCCCTTAATTTTAACTTTTA
ATATAGTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTCTATTTGA
AAAGGTGTATGTGGTGGTTCGGTTGCCAACGCCTCCCACTGGTTTATATA
TTTCAGTGCTTGCTCCCCAGTTGTCGCAACTGTTGACTATCTACTAACAG
GCAGGTATTTTTTTTTTTTCGACTGACCATCGGCATACAAACACAGCCGT
GTTATATTCCCCTTATCGACTATCCCAAGCGATGTCGCTGTCGTTTCCTT
ATGTACCCCACCCCTCCCCGTGGTTCGGGTCGACCACTTTCCCCACGCCC
TCTAACACTACCACCATCGTTCCCAGAACACGACCTATCTAAATCCTTTA
GAATTCCTCCCTTTTGATTCATTTATCTTTCCACCTTTTATAATATTCCT
CACTTCCTCTCCTTACTCCGCCTCTCTTTTCCTCCTTCCCTTTTACTTTC
ATATCTAGACTCCATATTCACTCTTCTTTCTATTAATAAAAACACCATAT
CTTCTATTTTCCCCTATTAGTCTTTACACCCCTCGCTCTCCCTTCCTTAC
ATTATTATCACCCCTTCCTACAACTTATAAACTCATGCCGCACCTATTTA
TATAACTCCCTTACCACAAGGCACCTTCCCCTTTTTTCTTCTCAACCCCG
ACATTCTCTTTCTCTATAAAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACCACGTGAACTACGAATTCCAGACGTGA
AACAGGGAGGATGACAAAGAACTGACAAGATTTTTGTGTAGATGAGATGT
CAGAGAGGAGGTAGCGAGGTGTGGGTTGTTATGCCTGCAGGCAGGAACCC
AGCACCGTGGGCTGATGTTTACTCTGCTGGGGGATGAGGGATTGCTGCGT
GATTTCTGTGATTTGTTCATTGGTTTCTGGACTGTGGATGTAAGTGTCCC
CTCCAAGGCTGATTTTTTTTCCATCGTTATGGTCACGTGTATAACAGCCT
GTTTAGACCTGTGTGTGCGCCTCTCAGCAATCTGGTATAACCTGGCTCTG
TCTCCCCTCCTGCCCCTTTGCTGACACCTCTCCCCTCGTACGCCCCTATC
CTTCATGCAGCTCATACGGTATCTGTTGTGATCTCCCCATATTTCCGTGT
ACCTACCTTTCTCTCCCCTTTTCTCTCTGTTCCCCCCTCTTTTCCCCCCG
CTCCCTCCTTCTTCCTCCCCTTACTCCCCTCCCCCCCTCCTTCCCTTTCC
CCTTTCCCCCCCCTTTTTTTCTCCCCTTCTCGCTAGCGTCCCCCCCCGTC
TGCTCTCTTCCTCTTCCCCCCCTTCTTTTTCTCTCTTCTTCCCCTTTCCC
CTTCTCCCCCCGCTTTTTCTTTCCTCCTTTCTCTCCGCGCGTTCTTCCTC
TTTTTGTTTTCTTTCACTTTACTTCCCTCTCCTCTCTTTTCTCTTTTTTT
TCCCCCTCTTTTCCCCCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no459_o14.g1 MSMg01no459_o14.g1 CHROMAT_FILE:
MSMg01no459_o14.g1 PHD_FILE: MSMg01no459_o14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:00 2005
         (276 letters)



>mm_chr11_103612136_103612810
          Length = 675

 Score =  482 bits (249), Expect = e-140
 Identities = 266/275 (96%), Gaps = 7/275 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccacgtgaactacgaattccagacgtgaaacagggaggatgacaaagaactgacaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccacgtgaactacgaattccagacgtgaaacagggaggatgacaaagaactgacaaga 260

                                                                       
Query: 61  tttttgtgtagatgagatgtcagagaggaggtagcgaggtgtgggttgttatgcctgcag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tttttgtgtagatgagatgtcagagaggaggtagtgaggtgtgggttgttatgcctgcag 320

                                                                       
Query: 121 gcaggaacccagcaccgtgggctgatgtttactctgctgggggatgagggattgctgcgt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggagcccagcaccgtgggctgatgtttactctgctgggggatgagggattgctgcgt 380

                                                                       
Query: 181 gatttctgtgatttgttcattggtttctggactgtggatgtaagtgtcccctccaaggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatttctgtgatttgttcattggtttctggactgtggatgtaagtgtcccctccaaggct 440

                                              
Query: 241 gatttttttt---ccatcgttatggtcacgtgtat 272
           ||||||       ||||||||||||||||||||||
Sbjct: 441 gatttt----aagccatcgttatggtcacgtgtat 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space:   177822
Effective search space used:   177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)