BAC Information

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BAC

Clone NameMSMg01-460E02
Chromosome11 (Build37)
Map Location 36,130,605 - 36,307,831
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, LOC100039006, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460E02.T7 (MSMg01no460_e02.b1)MSMg01-460E02.TJ (MSMg01no460_e02.g1)
ACCAG545656AG545657
length718725
length of high quality
(start - end)
514 (39 - 552)453 (70 - 522)
definitionCHROMAT_FILE: MSMg01no460_e02.b1 PHD_FILE: MSMg01no460_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:27 2005CHROMAT_FILE: MSMg01no460_e02.g1 PHD_FILE: MSMg01no460_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:33:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,130,605 - 36,131,114)(36,307,379 - 36,307,831)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTGAATATTGTTTGCCAGAGTTTGTGCTTCCACTGCAAGCTGTTAAAGTC
CTGTACCTTGCACAAAGGGGAAACGGCTATGCTACACTGTCCCGTTGGCC
GCTCTGCAGACACTCAGCGCCAGCCATTCCTAACCTTGCTGAAACATTAC
TACATTTTCCATCACGATAAGGTTATTAGTAGATGGGAAACAAATAACGA
AGCTTCCGAGTCTGTCCCACTTCCTAACTGTGTGTGAGGAAGCTTTTTCA
AGGGACAGAAATTGTTGCCCAGGAAGAGAAACTTTTGTTATGTCTTAGGA
AATTTCCAACAGAAGAAGTGGTGGATTCTGGGAAAAGGAGCAGAGTACAA
AATGATGTTGGAAGATGACAGAAAGAAACCCAAGGGTGCTTTGAGTTTAG
CAACATAACAGGAAAGGGATGGGGTGAGAGACGGATGACGGGAGGGCCCC
TGTCCTGTTGAATATGCTATAGCTCAGCACTACCTGCCATGGATTTAGGA
ATTCTGAGGAGATGTTAGAAATTCACATCGACATCCAATTACCTGGATGC
TTCTAGGCTCTGTGCTTTGAATGCCCCCAATTAACAAATGATTTTAGTTT
TGGAGTCCCAGAAACTACACGAGGAATATTTTCTTGACTGCCATCTACCA
CCGGGGTGAGGGGTGGAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCAGGCAAGCCATTTGCCTTCCCACAGCGG
GCTGCTGTCATGTCACCTTTGATGGAGTGATAATAACCTCTTGTGTCTGG
GAACAGCTTATGTTTTACAAAGTACTTTTAGTTATGCTGTCTGACTGATT
TGCTCGGATCATCTACCACCTGTGTGGTGGGTGTTACCATTATTAGTAGG
TCCACATTTTGCTAATAAAGGTGCTGGAAGTAGAGGATTCATTCAGAGAT
GTAAAATGATATCTATCATATAATTGTATATAATCAGTGAGTATATTGTA
TTTACCTATTCTGTGCTGAAGGCTTGGTTTTCTTGTATGTGAAATGTGGT
AGAGTCCACTCCTTAGACATTGAAGTTTTTATGTGACAAGATCTTAAGTG
TGTGCTTGAAACTATAGATAGTACTGATCCCTATAAATACTAATGATTTT
CTGATGCATAGCTATCTATGTAAAAAAAAAAACCCCATATTAACATGTAA
GGAAATATAGTGATTTTGCCACATCCTACAATAATTTGCCAGGGTCACAA
CCTTCGTCTCCTTTGTAGGCTTTTATTACCTTCCATATGACCGCTGCTTT
ATACCCTATTTCATACAAAAATCATACCAATCCCATTCAATAACCGGTCC
GGGTTTCTTTTTCCCTCTCAGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_e02.b1 MSMg01no460_e02.b1 CHROMAT_FILE:
MSMg01no460_e02.b1 PHD_FILE: MSMg01no460_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:27 2005
         (514 letters)



>mm_chr11_36130401_36131314
          Length = 914

 Score =  986 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttgaatattgtttgccagagtttgtgcttccactgcaagctgttaaagtcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttgaatattgtttgccagagtttgtgcttccactgcaagctgttaaagtcct 264

                                                                       
Query: 65  gtaccttgcacaaaggggaaacggctatgctacactgtcccgttggccgctctgcagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtaccttgcacaaaggggaaacggctatgctacactgtcccgttggccgctctgcagaca 324

                                                                       
Query: 125 ctcagcgccagccattcctaaccttgctgaaacattactacattttccatcacgataagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagcgccagccattcctaaccttgctgaaacattactacattttccatcacgataagg 384

                                                                       
Query: 185 ttattagtagatgggaaacaaataacgaagcttccgagtctgtcccacttcctaactgtg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttattagtagatgggaaacaaataacgaagcttccgagtctgtcccacttcctaactgtg 444

                                                                       
Query: 245 tgtgaggaagctttttcaagggacagaaattgttgcccaggaagagaaacttttgttatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgaggaagctttttcaagggacagaaattgttgcccaggaagagaaacttttgttatg 504

                                                                       
Query: 305 tcttaggaaatttccaacagaagaagtggtggattctgggaaaaggagcagagtacaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcttaggaaatttccaacagaagaagtggtggattctgggaaaaggagcagagtacaaaa 564

                                                                       
Query: 365 tgatgttggaagatgacagaaagaaacccaagggtgctttgagtttagcaacataacagg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgatgttggaagatgacagaaagaaacccaagggtgctttgagtttagcaacataacagg 624

                                                                       
Query: 425 aaagggatggggtgagagacggatgacgggagggcccctgtcctgttgaatatgctatag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaagggatggggtgagagacggatgacgggagggcccctgtcctgttgaatatgctatag 684

                                         
Query: 485 ctcagcactacctgccatggatttaggaat 514
           ||||||||||||||||||||||||||||||
Sbjct: 685 ctcagcactacctgccatggatttaggaat 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no460_e02.g1 MSMg01no460_e02.g1 CHROMAT_FILE:
MSMg01no460_e02.g1 PHD_FILE: MSMg01no460_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:27 2005
         (453 letters)



>mm_chr11_36307272_36308124
          Length = 853

 Score =  876 bits (453), Expect = 0.0
 Identities = 453/453 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggcaagccatttgccttcccacagcgggctgctgtcatgtcacctttgatggagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tccaggcaagccatttgccttcccacagcgggctgctgtcatgtcacctttgatggagtg 501

                                                                       
Query: 61  ataataacctcttgtgtctgggaacagcttatgttttacaaagtacttttagttatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ataataacctcttgtgtctgggaacagcttatgttttacaaagtacttttagttatgctg 441

                                                                       
Query: 121 tctgactgatttgctcggatcatctaccacctgtgtggtgggtgttaccattattagtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctgactgatttgctcggatcatctaccacctgtgtggtgggtgttaccattattagtag 381

                                                                       
Query: 181 gtccacattttgctaataaaggtgctggaagtagaggattcattcagagatgtaaaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtccacattttgctaataaaggtgctggaagtagaggattcattcagagatgtaaaatga 321

                                                                       
Query: 241 tatctatcatataattgtatataatcagtgagtatattgtatttacctattctgtgctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatctatcatataattgtatataatcagtgagtatattgtatttacctattctgtgctga 261

                                                                       
Query: 301 aggcttggttttcttgtatgtgaaatgtggtagagtccactccttagacattgaagtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggcttggttttcttgtatgtgaaatgtggtagagtccactccttagacattgaagtttt 201

                                                                       
Query: 361 tatgtgacaagatcttaagtgtgtgcttgaaactatagatagtactgatccctataaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tatgtgacaagatcttaagtgtgtgcttgaaactatagatagtactgatccctataaata 141

                                            
Query: 421 ctaatgattttctgatgcatagctatctatgta 453
           |||||||||||||||||||||||||||||||||
Sbjct: 140 ctaatgattttctgatgcatagctatctatgta 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)