BAC Information

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BAC

Clone NameMSMg01-460N08
Chromosome11 (Build37)
Map Location 31,836,752 - 31,837,010
singlet/doubletsinglet
Overlap genenone
Upstream gene4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik, Cpeb4
Downstream gene4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460N08.T7 (MSMg01no460_n08.b1)MSMg01-460N08.TJ (MSMg01no460_n08.g1)
ACCAG546097AG546098
length718612
length of high quality
(start - end)
263 (43 - 305)---
definitionCHROMAT_FILE: MSMg01no460_n08.b1 PHD_FILE: MSMg01no460_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:12 2005CHROMAT_FILE: MSMg01no460_n08.g1 PHD_FILE: MSMg01no460_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTCTGTCCTCTCCCTCCCTCATATTCCAAGGATGGGAACTGCAAAGA
TTTGAAAAACTAAGAATTTGGGATTTATCTCACCATTCCAGGTCTCTTAT
TAGAGAACATTTCTGTTTTGAGATGCCATGAATCTTCTCTGGATAAATCC
AAATCGTTCTCTAGTCAATTGGGCTTTACCACTGGCCGTCAGGGAACATG
TCTTACTGTGATTGCGTGTGGTGACGAGTTACAAAAGGACTACTTGTCTC
ATGGAAGTTTTTTATGAGCATCAGCATCAAGTCCAGGATGCAGCACAACA
TCCATGGTTTGTGTTGCACAGTCTTCGATTAGGTGTCCGTGAGAGATGAT
GTAGGCAGATGGGGCCTAAGGGCGGTGAACTGGGGACACAGATGCTGGGA
TCTAAGCTTGAGCCTGCTTTATCCTCTGCCTTCTATTTCAGGAACTAGAG
CTTTGATGCCATACAAATGTCTGTGTGATCAAGCAAATGGCACCATTTTA
AAGAGATTATTTTCATCTCTTCTCCCACACCTTCTGTGATATCTATCCCT
GAATAAAAAAGAACCCTGTCCGACCTAGAAATGGATTCCCTAGAATCTGC
CCTAGGGCGCTAAGGGATCCTGAATTCATTTCTGAAAAAAGTTAACCCGC
AAAAATAAACTTGGGGGN
TTTTGCCAATNCCNCCTCCTTCCTCTCAATGCTGTGCGCAGGCCTGGCGG
CCGCCTGTTTCGCACGNACATGTGTAGGTGACACTATAGATTGCCCGCGG
AATCTCTCATTCTTTCTGGGCACCAGAGTTTCCATGGGCAACCCAAAGCT
CTCCNTTTGCCACCTTTTGGAGAATGTCATTTAAGGCTGTGGAGGGGGGA
GGTGGACCAAAGCCCACCAATGTCCTCAAGGCTTGCTTGGCAGGCGCCTT
CGGGGTAAGGCAATCCCCGGGCCTTGTGGCAAAAAAAAAACCCCCTTTTT
TGGGGGAGGGAGAGGACTTCCCCCTCGCTTGTTTTTATTTCTTTCACCTC
CCTATTCTGTCCCCCTTTGTAAGATGGGGTTATAACCACATATAATTCCC
CTCCCCCCCTTCTCTCTTTCCTCTCCTCTTTCATGATTCTTCTCCTTGTT
CCCCATCTCTTCGTATTTCCTCCCCTCTTCTTTCCCCTCAAATTCCATTC
TCTATTAATTATCCTGTGAGTCCCGCCATTCCTTTCGCCCCTTTTTTTTT
TCTTTCTCCTCCCCCTCGTTGATTGCCCCAAATTAGCCACCTATCTTCCC
TTCTTTTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_n08.b1 MSMg01no460_n08.b1 CHROMAT_FILE:
MSMg01no460_n08.b1 PHD_FILE: MSMg01no460_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:12 2005
         (263 letters)



>mm_chr11_31836548_31837210
          Length = 663

 Score =  478 bits (247), Expect = e-139
 Identities = 256/259 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctctgtcctctccctccctcatattccaaggatgggaactgcaaagatttgaa 64
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctcagtattctccctccctcatattccaaggatgggaactgcaaagatttgaa 264

                                                                       
Query: 65  aaactaagaatttgggatttatctcaccattccaggtctcttattagagaacatttctgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaactaagaatttgggatttatctcaccattccaggtctcttattagagaacatttctgt 324

                                                                       
Query: 125 tttgagatgccatgaatcttctctggataaatccaaatcgttctctagtcaattgggctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgagatgccatgaatcttctctggataaatccaaatcgttctctagtcaattgggctt 384

                                                                       
Query: 185 taccactggccgtcagggaacatgtcttactgtgattgcgtgtggtgacgagttacaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccactggccgtcagggaacatgtcttactgtgattgcgtgtggtgacgagttacaaaa 444

                              
Query: 245 ggactacttgtctcatgga 263
           |||||||||||||||||||
Sbjct: 445 ggactacttgtctcatgga 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 663
Length adjustment: 9
Effective length of query: 254
Effective length of database: 654
Effective search space:   166116
Effective search space used:   166116
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)