BAC Information

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BAC

Clone NameMSMg01-461D13
Chromosome11 (Build37)
Map Location 49,109,598 - 49,110,001
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392
Downstream geneOlfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D13.T7 (MSMg01no461_d13.b1)MSMg01-461D13.TJ (MSMg01no461_d13.g1)
ACCAG546395AG546396
length769747
length of high quality
(start - end)
241 (70 - 310)489 (72 - 560)
definitionCHROMAT_FILE: MSMg01no461_d13.b1 PHD_FILE: MSMg01no461_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005CHROMAT_FILE: MSMg01no461_d13.g1 PHD_FILE: MSMg01no461_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCGCGGAAT
TCCATAGATTATCTGACAAACACCTTTGATGTCCACCTTTTTTTTTTTTC
AAGACAGGGTTTCTATGTGCAGCCCTGGGCTGTCCTAGAACTCACTCTGT
AGACCAGGCTGGCCTCAAACTCAGAAATCCACCTACCTCTGCCTCCCAAG
TGCTGGGATTAAAGATGTGTGCCACCACTGCCAACCTTTTTAAATGCTTC
TTTTAGCTCCCTTAGGCAGAGCATGTTGTTTGGCTCTAAGGATGCCGTCC
TGCTGGCAGTGTTAATAATTTAATTTAATCTATATAAGTCTAAGTTTTTG
ATCTTTCCCAGTGGATTCAAACACACACTCACTCACACACACACACTCAC
ACTTTATCACATACACACACACATATACACACATACTCACACTCCACACC
ACACACACTTATATATATGTATATATGTGTGATATATATATACTTATATA
TTTATGTATATATGTGTGCGTTCCTCCCTTTTTCTTCCCTGTCACTTTGT
TCTCCCATTTTTTTCTCCATTTTTTATTATTTTTTTTACCACCTTCTCGT
TATTTATCATCTTTTTTCGTCACCTTTCCTTTCATTCTTCCCTCCCATTT
ATTTTTTTATATTTACCTCAAAAAAAGCTTCTTCCTCATTTTCTGTACAT
CTCTTCTCTGCTTACTACGTTCACTTCTTTCTTCTTTCCACTTTTCTTCT
TTCCCTTTACATTTCTTTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTTTGGACAAAAAATACAAAGCAGATTC
ATAAATGTCCAAGCTTCTGAAAAGACATGACTATGACTGTGGCATGGTGG
AACACTAGGAAGTCACAAATGGAGAAAACAGCCATATCACCTCCTTCAAG
GTTCATAGTCCTTTGGAGATGAGGGAACAGTAAGCATGTAAGCACCAAAA
GAAGAGGTAAGGTCTTCTTCAAGCTGTTTCTCCTATATTGAAAATTCCCT
CTTTGACCATAGAGGAAGGTTCCTTAAGACTCAGAAAGTAAACAAAACTC
ACAAGTCTCAAGAAGTTTCTGAAACTTACAAGAATCCCAAAGGCCTTCCC
GAAATTTACACTAGCAGAAACAACTACTTCAGAGAAGAGACTCTGGCTGG
CTGGTTGAGATACCGGCCAGTAATGCAGAGTGGCCCAAAACTGTGGTTTT
CCTGAGACACCACCTATACTCTGGTGACGCAGCTGCCTTTGAGTCATCCC
CACCCCTGTGACTCAAAATCAAGTCCCTGATTTGCTAAGGTAGAGTTGGT
CAAAATAACTTCCTTGATTTGCTGCTCTTAAGCTATAAGTGTTTTCTCTT
AACTTCCTTGTATATGCAACCCAGAAAATTTCTCCAGGCCAACTATCTGT
ACTTTTTTCCCCGCTTTTACCATTTTATCCACCCATTATTTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d13.g1 MSMg01no461_d13.g1 CHROMAT_FILE:
MSMg01no461_d13.g1 PHD_FILE: MSMg01no461_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:44 2005
         (489 letters)



>mm_chr11_49109598_49110485
          Length = 888

 Score =  737 bits (381), Expect = 0.0
 Identities = 399/405 (98%), Gaps = 1/405 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctttggacaaaaaatacaaagcagattcataaatgtccaagcttctgaaaagacatgac 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 404 tctttggacaaaaaatacaaagcaaattcataaatgtccaagcttctgaaaagacatgac 345

                                                                       
Query: 61  tatgactgtggcatggtggaacactaggaagtcacaaatggagaaaacagccatatcacc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 344 tatgactgtggcatggtggaacaataggaagtcacaaatggagaaaacagccatatcacc 285

                                                                       
Query: 121 tccttcaaggttcatagtcctttggagatgagggaacagtaagcatgtaagcaccaaaag 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 284 tccttcaaggttcatagtcctttggagatgagggaacagtaagaatgtaagcaccgaaag 225

                                                                       
Query: 181 aagaggtaaggtcttcttcaagctgtttctcctatattgaaaattccctctttgaccata 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 -agaggtaaggtcttcttcaagctgtttctcctatattgaaaattccctctttgaccata 166

                                                                       
Query: 241 gaggaaggttccttaagactcagaaagtaaacaaaactcacaagtctcaagaagtttctg 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gaggaaagttccttaagactcagaaagtaaacaaaactcacaagtctcaagaagtttctg 106

                                                                       
Query: 301 aaacttacaagaatcccaaaggccttcccgaaatttacactagcagaaacaactacttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 aaacttacaagaatcccaaaggccttcccgaaatttacactagcagaaacaactacttca 46

                                                        
Query: 361 gagaagagactctggctggctggttgagataccggccagtaatgc 405
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  gagaagagactctggctggctggttgagataccggccagtaatgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space:   420562
Effective search space used:   420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)