BAC Information

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BAC

Clone NameMSMg01-461F23
Chromosome11 (Build37)
Map Location 27,008,591 - 27,008,967
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461F23.T7 (MSMg01no461_f23.b1)MSMg01-461F23.TJ (MSMg01no461_f23.g1)
ACCAG546511AG546512
length791755
length of high quality
(start - end)		377 (67 - 443)405 (72 - 476)
definitionCHROMAT_FILE: MSMg01no461_f23.b1 PHD_FILE: MSMg01no461_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:57 2005CHROMAT_FILE: MSMg01no461_f23.g1 PHD_FILE: MSMg01no461_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATTTGCGGCGCTAAACGACTCCTATAGTTCGACAACCGCGGAATTCA
ACTTTTTTACTTAGATTTTTCACTCCTAGGGTTGATTAAATACATATGAG
CAAAGAAGGGACTTAATTTTCTCTTCTGTGGTGCCTTATTTCATGCTCAA
AGATAACAATCTGGCATTTTTATTGTACTCTTCCAAGAGCATGTGAAGTT
GAAACGTCCTTGATGACACCAGGACTGAAAGCTCCCTTTTTGAGGGAGCC
TGCTCTGTCCAAGAATCTGTCCCCCTTGTATTAATGAAATATTTTTTCAT
TTAAAATTTCTTTTTTCTTGTTGGTTAATTTTCTAATTCCAAAGATTGTG
AGTAGTTTGAAGACAAAGATCATACACATTTTTGCTTTTCTCTCTTTTTT
CCAGTAATGCTTGGCAAAGTGCTGGTCATATAAATATCTCTGGGTGAAAT
TTTGCCATAATTGANATTAATGGGTTATACTTTGGACAAAGTATTTTACT
TTGAAAACTTTTCCCCAGTCTTAACTAGAAAGTTTATAACATAAATTTAC
TTCCTAGCCTATTTCTTTTGAAAAGGTCTCCACTCAACGGTTTTAAACAA
ATGGCAATATTTTTCCCTCTCGGGATTCTCCGAATTAATAATACCTCTCC
AAAAAAGGGTTGTGTGTTTTTAACAATATATCTTCAAAACTCCTCCCCTT
TTCTTCACTTTTTATATATAAAAAATCTTTTCTCGGTAATATAAATTATT
ATAATATTCTGCCCTCTTTTTCTTATCCTGTCTCTCTCTTT

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTTAAGGACTGCCT
AGGACATTGGTGAAGGCCAGGAAGCAAAGTTCAATTTTTTTTAGGTATTT
GACACATCATTGCTTGGAGGCACCTAAATTAAAACAATACTGAAAGAGAG
CACACAGATCCATTCACTGACTAATGCAGAGACAGGTTTTGGAGCATTTG
TTCTACAGAATGCCAAAGTTTCTAGGAGGCTGAGTTTCTGTGAAACTCTT
TGCCTCGGGACTGAGTCCAAGCTTTTGGGTCTGCCACAGAGTCTTCACTG
GAGTGGGTGTGGCAAGGTAATATTTAATTCATTCTTGGATTTCTAATGGG
ATTGAAGACTAGTCTCAGAACCAAACTTAAGTTGTTTAGCATTGAGTGAT
ATGATATAGAGTTGAAAGCATGGCTTTCAGGTGGTGATACAGGCATAAAT
CCAAACATAATTCCAATATAGAATTTTAAGCTCTTTACTTTAGAAATGAT
GCCACAATGCTTTATCTATTTGGCCAATATGAAGCACTGGATGTTTATGG
ACACCAAATTCTGGCCATTTAATAACTGTTATTGGGCAATTTAATCCACC
CCTTTGGTGACAGAACCCCCTCCTTTTTTTTTACCCCCACTCCTTTTTCC
TTTCCATTTTTCTTTCCTCCTTTCCCCCTTTCCCTTTTTTCCCCTTCTCT
CCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_f23.b1 MSMg01no461_f23.b1 CHROMAT_FILE:
MSMg01no461_f23.b1 PHD_FILE: MSMg01no461_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:57 2005
         (377 letters)



>mm_chr11_27008391_27009167
          Length = 777

 Score =  667 bits (345), Expect = 0.0
 Identities = 369/377 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttcactcctagggttgattaaatacatatgagcaaagaagggacttaattttctcttc 60
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ttttcacttctagggttgattaaatacatatgagcaaagaagggacttaattttcttttc 260

                                                                       
Query: 61  tgtggtgccttatttcatgctcaaagataacaatctggcatttttattgtactcttccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tgtggtgccttatttcatgctcaaagataacaatctggcatttttattgtacttttccaa 320

                                                                       
Query: 121 gagcatgtgaagttgaaacgtccttgatgacaccaggactgaaagctccctttttgaggg 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gagcatgtgaagttgaaacgtccttgatgacaccaggactgaaagccccctttttgaggg 380

                                                                       
Query: 181 agcctgctctgtccaagaatctgtcccccttgtattaatgaaatattttttcatttaaaa 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcctgctctgtccaagaatctgtcccccttgtattaatgaaatattttttcatttaaaa 440

                                                                       
Query: 241 tttcttttttcttgttggttaattttctaattccaaagattgtgagtagtttgaagacaa 300
           |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 441 tttcttctttcttgttggttaattttctaattccaaagatggtgagcagtttgaagacaa 500

                                                                       
Query: 301 agatcatacacatttttgcttttctctcttttttccagtaatgcttggcaaagtgctggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatcatacacatttttgcttttctctcttttttccagtaatgcttggcaaagtgctggt 560

                            
Query: 361 catataaatatctctgg 377
           |||||||||||||||||
Sbjct: 561 catataaatatctctgg 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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