BAC Information

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BAC

Clone NameMSMg01-461H23
Chromosome11 (Build37)
Map Location 105,429,098 - 105,429,567
singlet/doubletsinglet
Overlap genenone
Upstream geneMyl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
Downstream geneEG666807, Tanc2, LOC667737, Cyb561, Ace, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461H23.T7 (MSMg01no461_h23.b1)MSMg01-461H23.TJ (MSMg01no461_h23.g1)
ACCAG546606AG546607
length7571,036
length of high quality
(start - end)		429 (72 - 500)---
definitionCHROMAT_FILE: MSMg01no461_h23.b1 PHD_FILE: MSMg01no461_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:07 2005CHROMAT_FILE: MSMg01no461_h23.g1 PHD_FILE: MSMg01no461_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATAATTGCGGCGCTAAACGACTCCTATAGTTCGAGGACCGCGGAATT
CCATGTACATTCCACAGAATGGCCAGTGTGGTGGTGCATGTCTTTAATGC
CAGCACTAGGGAGGTGAAAGCAAATGGATCTATGTGAATTCAAGACTTCC
CGGCCTACAGAGTGAGCTCCAGGACAGCCAGGGCTACACAAAAAAACTCT
GTTTGAAAAACAAACAAACAAACAAACAACCCAACAAAACAACAAAAGAC
CAGGTTGTTGTTTTTTACCATTAAACCATTAACCACGTTCCCCATTCCTT
TGAGACCATGTCTTGTTGTATAGCCCATGAGCTATGCCAACATGCGCAGT
CCATAACCATGCATTTTATGTGTGTGAGTGTTCATATGTGTACACATGTA
TGGAAGCTAGAAGTCAAAGCCGGGTGTCTTCCCAAATGCTCTCAACCGTA
CCTTTTGTGGCAGGACCTCTCACTGAATCCAGAGCTTATCAGTTCAACCA
GAAGAACTGGCCAGCAAGATCCAGACATCTTCCCCCTCTGGCCCTGCCCC
CCAAAGCTGGGAATATAAAGGTACACCACTAATGCCTGCTTTCTACCTAG
GGGCTGGAGATCCCAGTCTAAGGTCTAAAGACTGTGGGGCAAACATTTTA
CTGACTGGAGTTCTCCTCTCCACCCCCGAAATATGGTTTTTTGTTAAAAT
AAATACCCCCCCCCTGGACCTCGTTTCTTAAAAGGTAAAGAAACCCCCGC
TTGTATC

TTTTTTATTCTTTTTTCCCTTTNTNTCTCTCTCTCCCCCCCCTCTCCTTT
TTTTTTTTNTTTTTTCTCTTCTACTATTTCTTCTCCTCTATTTTTTTTCC
CTCTTCCCCTTTCCCCTTTCTTTCTCTCCTCTAGCCCACCCCCCCACCCT
CCATCCATCACCCCACTACTCACCCCACCTCCCGGTGGGGGCGTCNCNCN
TCTCCCNNCTCCTCTCNTTCCCTCTCCTCTTTTTTACCCCTTTTCCCCCC
CCTTTCCCTTATTTCCTCCCCCTCTTCCTTCCTCTTCCCCCTCCTTCCCT
CCTCCCTCACACCTTTTTCCCACTTCCCCTTCCCCCTCCTCCCTCCCTCC
TTACCCTCTACTACCACCCTTCTTACCCCTTTCCCTACCCCTTCTCCCTC
TCCTCCCCCTCCCCTTCATCCTCTCCCCCCCTCTCCTCTACCCTCCTTTC
CCCCCCTTTTTACCACCCTCCCCCTCTATCCCCACCCCCTCCTCTCCTCT
CCTCTCTTCCCCCTCTTTCCCCACCTTTCACTCCCCCTTCTCCCTCCCTC
CCCCTCATCCCTCCTTTCATCTTTTACCCAATCTCCATTACCTCCTATTC
CACCTTCCACTATCCACTCCCCCCCTCATTCCTCCTTCTCCTCCTTTTCC
CCCCCCACACATCCTNTTTTCCCACCTACCTTCCACCTCTACTTCCCACC
CCCTATTATCTCAACCCATCTNTCCCTTTCCCTCCTATATTTCCCTCTTC
CCCCTTCAATTATCCTCTCTCCCTCCTACTCTTCCTCCCCACCCCTCCTT
ATCCTTCTCTCCCCACTTCTCCTAATACTCCTCCTTTCCTCTCACCCCCT
CCTCTTCACTCCCCCCCCATTCTCCCTATTTCCCTTTATACCACTCCCCC
TCTATATTCTTTCCTTTACCCTCCCCTCCCACCTCNTTATTACTACTCCT
TTACCCCACCTTATTCTCCTCCTCCCCCTTTCTCTCACTCTTCTTTCTCC
TCATACTCCTCCACCCCCTCCTTCTCTCCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_h23.b1 MSMg01no461_h23.b1 CHROMAT_FILE:
MSMg01no461_h23.b1 PHD_FILE: MSMg01no461_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:07 2005
         (429 letters)



>mm_chr11_105428902_105429730
          Length = 829

 Score =  719 bits (372), Expect = 0.0
 Identities = 426/470 (90%), Gaps = 41/470 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccagtgtggtggtgcatgtctttaatgccagcactagggaggtgaaagcaaatggatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gccagtgtggtggtgcatgtctttaatgccagcactagggaggtgaaagcaaatggatct 256

                                                                       
Query: 61  atgtgaattcaagacttcccggcctacagagtgagctccaggacagccagggctacacaa 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgtgaattcaagacttcccagcctacagagtgagctccaggacagccagggctacacaa 316

                                                                       
Query: 121 aaaaactctgtttgaaaaacaaacaaacaaacaaacaa----cccaacaaaacaacaaaa 176
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 317 aaaaactctgtttgaaaaacaaacaaacaaacaaacaaacaacccaacaaaacaacaaaa 376

                                                                       
Query: 177 gaccaggttgttgttttttaccattaaaccattaaccacgttccccattcctttgagacc 236
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaccaggttgttgttttataccattaaaccattaaccacgttccccattcctttgagacc 436

                                                                       
Query: 237 atgtcttgttgtatagcccatgagct---------------------------------- 262
           ||||||||||||||||||||||||||                                  
Sbjct: 437 atgtcttgttgtatagcccatgagcttatgatcctcccgcttcagtgcttacattgtaag 496

                                                                       
Query: 263 ---atgccaacatgcgcagtccataaccatgcattttatgtgtgtgagtgttcatatgtg 319
              |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 tatatgccaacatgcgcagtccataaccatgcattttatgtgtatgagtgttcatatgtg 556

                                                                       
Query: 320 tacacatgtatggaagctagaagtcaaagccgggtgtcttcccaaatgctctcaaccgta 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tacacatgtatggaagctagaagtcaaagccgggtgtcttcccaaatgctctcaaccgta 616

                                                             
Query: 380 ccttttgtggcaggacctctcactgaatccagagcttatcagttcaacca 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccttttgtggcaggacctctcactgaatccagagcttatcagttcaacca 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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