BAC Information

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BAC

Clone NameMSMg01-461P02
Chromosome11 (Build37)
Map Location 64,882,331 - 64,882,615
singlet/doubletsinglet
Overlap geneAU040829
Upstream geneCox10, 2810001G20Rik, EG544785, Hs3st3a1, LOC626959, Elac2
Downstream gene1700086D15Rik, LOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461P02.T7 (MSMg01no461_p02.b1)MSMg01-461P02.TJ (MSMg01no461_p02.g1)
ACCAG546946AG546947
length775765
length of high quality
(start - end)
289 (76 - 364)305 (74 - 378)
definitionCHROMAT_FILE: MSMg01no461_p02.b1 PHD_FILE: MSMg01no461_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:44 2005CHROMAT_FILE: MSMg01no461_p02.g1 PHD_FILE: MSMg01no461_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:35:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCTCAAAATTTTGTGATGCCTATACGACTTACTATTTCCAGAGGATCC
GCGTAATTCCCTGATTCCACGGCAAGGGCTCTACACCAATAGGTTCCGTA
GCCACCTTATAGATAACAACTGCCCATCACCCAGGCCTTATCTGCTTTCT
CCCACCCTCTGCCAAACTCCTCTTCATATGAAAGGACACATCCCCTCTGC
TAAACACATCCCCTCTGCTAAACACATCCCCACTGTTGCCATGGATCCCT
GCTGATCCTGATCCTTGTTGAATGAACGAATTCTGTAGCAGGCTTCAAGC
TAGCCTGTGGTTTTCCGGGTTGAAGATAAGCTCTTAGAATTAACTTGTCA
CCAGCTCTAGAGTTCAGGCAAAAACTCAAGAATAATACAATAAAAGACAG
AGTGTCCCCAGGTTTAGATGCATCCGCCTGTCCTATCTGAAATGATTGTT
CTTTCTCATATTACCCTGCCCTTAATAGGTATGTATCGCAAAACCACACA
CCCATATTATCTCCCAAATTCTGTTCTCCAACATATCTCGTATCCATTGT
CCCCTCCCTTGACTCCTAACATTTACCTCCCACCTTTTTCCCTCAATTCT
CATACCCACTAATCAACCGACGGCATGTAAATAAATTCTCTCCTATGGAT
TAATTGTTCTACCCTCTTCTTCTCCATATCTAAAACTAAGTTTATCCCGT
CTCCTTCAACCATCTTATATTATATCACCCATACCTTCCTTGCCTAATCA
TCCCACCCCTCCTTCTTTATATCAT
TCAATGATAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGTCTGGGGTCACTGGGATGATTAT
GCAGTAGCCAAGGGCGTTTGCTGCTATTTCAGAGTACCAGTGTTCAAACC
CTATACCCACATTGGATAGCTCACAACCACCTGTGGCTCCAGTTCCCGGG
GACCTGGCCTCATCTTGTGGTCTCCTTAGTCACCCATACACATGGCACAC
ACTCAACAGTCACATAAATAGAAAAGTATAAAAATAAATCATTTCCTGTG
CCACACAACAGTTTTACTCTCGAAAGTGTTTAAGGCTCAGACTTTCTGTC
CTTGGTAGAGACCCATCTTGAATCATCTTGGCGCTAACGCTGCCCTCACC
TAACAATGTGTGTTTTCTCATCCTCATGCCCCTACATAGAACAGCATATA
GCACAGAAGTTTTTAAAGATTCTCTGAGGTTTGAGGGAGCTGACCTCCTC
AATGTGTGATCCCCTATTTGGCCTGTTCTCTGCCGTCCCCTTAACACCCG
GTCTTCCACGATTGTTCCCTTATATTTTCCTTCGACCAGCCCTGTTTTTT
TACCCCCCCCTGTCCTGACTGGGTCTCTTCTGCTTGCTACCTTCCAATTA
TCCTGTCATTTCTACCATATCCCTCCTCTTTCCTGCCTTCTATCACATCC
TCTTATAAATTACTTTTCCCATCTTTCTTTTTCCCCCTCTTTCCCACCAC
TCACCTTATCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_p02.b1 MSMg01no461_p02.b1 CHROMAT_FILE:
MSMg01no461_p02.b1 PHD_FILE: MSMg01no461_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:44 2005
         (289 letters)



>mm_chr11_64882127_64882815
          Length = 689

 Score =  520 bits (269), Expect = e-152
 Identities = 281/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tctacaccaataggttccgtagccaccttatagataacaactgcccatcacccaggcctt 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 tctacaccaataggttccgtagccaccttatagctaacaactgcccatcacccaggcctt 264

                                                                       
Query: 65  atctgctttctcccaccctctgccaaactcctcttcatatgaaaggacacatcccctctg 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgctttctcccatcctctgccaaactcctcttcatatgaaaggacacatcccctctg 324

                                                                       
Query: 125 ctaaacacatcccctctgctaaacacatccccactgttgccatggatccctgctgatcct 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaacacatcccctctgctaaaaacatccccactgttgccatggatccctgctgatcct 384

                                                                       
Query: 185 gatccttgttgaatgaacgaattctgtagcaggcttcaagctagcctgtggttttccggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gatccttgttgaatgaacgaattctgtagcaggcttcaagctagcctgtggttttccggg 444

                                                        
Query: 245 ttgaagataagctcttagaattaacttgtcaccagctctagagtt 289
           ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ttgaagataagctcttagaattaacttgtcacccgctctagagtt 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)