BAC Information

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BAC

Clone NameMSMg01-462D08
Chromosome11 (Build37)
Map Location 98,595,919 - 98,596,082
singlet/doubletsinglet
Overlap genenone
Upstream genePip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4
Downstream geneThra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462D08.T7 (MSMg01no462_d08.b1)MSMg01-462D08.TJ (MSMg01no462_d08.g1)
ACCAG547150AG547151
length743806
length of high quality
(start - end)
185 (63 - 247)202 (75 - 276)
definitionCHROMAT_FILE: MSMg01no462_d08.b1 PHD_FILE: MSMg01no462_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:08 2005CHROMAT_FILE: MSMg01no462_d08.g1 PHD_FILE: MSMg01no462_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTC
AGAATCCGCGGAATTCCAAGCCAGTTTTCCACCCTAGCTGAAATAAATAA
ACAAATACGCAGAACCTGAGCAGTGACATGCCCAGACCTCTCCTCTGCAC
ACACACAAGTGTAGAGTCAGTGACAGAGGGGCTTTAGGTGAGTCAGGAGG
GAAAGGCAGTACAAAGAGAGTGGCATGCTGGCCTGGCCTCCCTAATGCTG
GGGCTCCGGGGGTTATAGCATCTCCCTTTCCTTCCTTCAATTGTCCAGGA
GAATGGAGAAAGGGAAAAATCCCCTCCGAACAGGGAAGAATTTGTTTTGA
AATGGAAGGGGGACCCCCCTCCCTTCCGGGCGGGGGTTTAGGCCCAAACT
ATCCCCAAAAAAAACCCGGGGGTAACCACGGCTTCCAAAAATGTCCAAAA
CCCCCTTAGTGTCCCCCCCCGGGGGGGGGGGGATGGACCCATAGTCTACA
TGGCCTTATTGGGGTCCTTTTAAAAAATATTCCCATTCCCCCCCGCGTGG
GGGAATTTTGGGTTCGAGGGTGTTTCCATCGGGTGTTGTGAAAATATAAA
CTTTTCTTTTGGGTTAAAAAAATATAACTTATTTGTTTTTTTTCTTAAAT
AACAAATTTCTTTTTTTTGTCCCCATTTATTTCCTTTGTGGAGCTTTTTT
TTTTTCTCCTTCTTTTTATTTCCCTTTATCTTCTGCTTTTTCG
CTATGCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTGGACCAGGCTGGCCTAAAA
CTCGGAGATCTGCCCTCCTCTGCTTCTGCCTCTGCTACCTGAGTGCTGGG
ATTCAAGGTATGTGCTACCACTACCCAGCTAAAGGTTTTCTTTTTAATTC
TGTATATATGGGAGGGATGGAGAGGGTATATACATGTGAATGCAGCATCC
ATGGTTTCCAGAATAGGTCACTGTCTCACCTGCAACTGAGTTAATAGTTT
GTTGTTGTAAGCTACCCATTTTTTTTCTTTAACTATAGCCCTCTGGAAAA
CCTTATATTCTCTTTATCACTGATCAATCTCTCCAGTCCGACTACTCTTA
CTCTCTTCTATTAGAGTTAATATCTTCACTCATTATTTTATGAGAATCCC
GTGTCCTATCTGATTACTTAGTAAAATTCTGCCCTTTTTGCAAATCGCTT
TGATTCTACCCGAACTCTTCTGTCCTTGCTCTCTTCCATTATTTCGTTGT
TTTTTTTCTCGAACCTCTCCTTTCCTTTCTTTTTTCTCTTTTGTTCTGCC
TTCCCATCTTATTTTTTCCTTCCCTTTCCCTTCTTTTCATATCCTTTCCA
TCTTTTCCCCTTGCTGGCTAATCCCCTTTCCTTTTTTTCCGTCTCCCCTT
TCCTTTTTACTTTCTTTACTTCTTTCTCCTCCACTCTCCCTCTCTTACTT
TATTTCCGATCCTCTTCCTTTCCCTTATCTTCTCTATCCCCCTTATTTTC
TTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_d08.b1 MSMg01no462_d08.b1 CHROMAT_FILE:
MSMg01no462_d08.b1 PHD_FILE: MSMg01no462_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:08 2005
         (185 letters)



>mm_chr11_98595701_98596284
          Length = 584

 Score =  296 bits (153), Expect = 6e-85
 Identities = 162/165 (98%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  accctagctgaaataaataaacaaatacgcagaacctgagcagtgacatgcccagacctc 78
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 382 accctagctgaaataaataaacaaatacaca-aacctgagcagtgacatgcccagacctc 324

                                                                       
Query: 79  tcctctgcacacacacaagtgtagagtcagtgacagaggggctttaggtgagtcaggagg 138
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcctctgcacacacacaagtatagagtcagtgacagaggggctttaggtgagtcaggagg 264

                                                        
Query: 139 gaaaggcagtacaaagagagtggcatgctggcctggcctccctaa 183
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaaaggcagtacaaagagagtggcatgctggcctggcctccctaa 219


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 584
Length adjustment: 8
Effective length of query: 177
Effective length of database: 576
Effective search space:   101952
Effective search space used:   101952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)