BAC Information

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BAC

Clone NameMSMg01-462E12
Chromosome11 (Build37)
Map Location 45,720,546 - 45,720,780
singlet/doubletsinglet
Overlap geneClint1
Upstream geneEbf1, LOC382510, LOC633082
Downstream geneLsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462E12.T7 (MSMg01no462_e12.b1)MSMg01-462E12.TJ (MSMg01no462_e12.g1)
ACCAG547206AG547207
length774795
length of high quality
(start - end)
237 (80 - 316)510 (75 - 584)
definitionCHROMAT_FILE: MSMg01no462_e12.b1 PHD_FILE: MSMg01no462_e12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:15 2005CHROMAT_FILE: MSMg01no462_e12.g1 PHD_FILE: MSMg01no462_e12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACATCACCGCGG
AATCAGGAGAATGACCAGACATGCATGGNGGCTGCTAAAAATGACTTTTA
AAGGGACAGAAAAAAAGGAACGGGTGACAAGAAATGAGAAGTCTACCAAG
GCGAAGTGCTGGAGGACACAGTGGCTGAAAGAAGGCCGCTGGCCTCTCAG
TCACCGCTCTGCTTCTTTCTTCCCTTCCTTCGTCCCAATACCCCAAAGAC
GAGGATCTATACATTAAAACAAGGGATTAGCATAGAAACCTATCAGTGAC
TCAGCCATAGCTAGCTTACTCCTTAGTACAACTCATTTTCCAACTATGTT
CAAGTCTAATATACTGTTATGCAAAAATCTTAACTCTTATTTAAAGTGTG
AATTAGAAACCTCTCACAAGTTTTCCTGTGTTAAAATGAAGGTTGCCAAC
AAGCCGGGAACAGGTTTCATCCATCACTGGATTTTCTACTTGAACATCAA
CGCACAGCGACACAAAACCATCCCGACAAAGCAGAGTTTATTAACTAGTT
TCCATGAGTCACACAGCAAATCTATTCCCCCAAATCAATGGTTAAACACC
ACTAAATACTAATTGTGGCAACCCACAAGACTTCAGCACATCTCTCTGTG
TCAAGGGACTGTAAATAAGGGAAGACAACCCTGGCTTCCTAGAACACTTA
AAATACCCAATGGGTGAAAAGTGGCAACCTACAGCATGGCCACGGGTCAT
CCCTTGGGCTACCCTAAAATGGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGA
GAAACACCTGAAAAAAATATTCAGCATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAGTGACAAGCAT
TTTTTATGTAGTGAATAAGAATTAAAGAAGTAGCCGGGCAGTGGTGGCGC
ACACCTTTAACCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGT
TCAAGGCCAGCCAGGTCTATATAGTGGGTTCCAGGATAGCCAGGGAAACC
CTGTCTCGAAAAACCAGAAAAAAAAAAAAAGAAAGAAAGAAAGAAGTAAA
ATAGGTTGTCAAATATCATATAGTCAGTGGCAAAGCTCAGGTGAAAATTC
ACAAAGAGCCAAAGGTACCAAAAGAGAATGTGGGGGCTAGTGAGATGACG
TACCAGGAAAAGGTCTCCCAGCTAAGGCCTGAGTTTGATCCCTAGGACCC
ACACAGTGGAAAGAGAGACCCAATTCCATTGCTCTCCACAGGCACACAGT
ATCACATGCACACACACTTTTTCCTCACACTTACACAATTCATATTCTTT
ATCTTGTTGATAAACATATGAAAAGGTTGGTATCCCTAAAAACGCTCAAA
TGTTGGCTTGCTTTGTCGTCTTAAAACTTCTTTTTCTTTTCCACTTCCTT
GAGTGTTAAAAAAATCCTTTTCTTAACTCTTCTTTAGTCTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_e12.b1 MSMg01no462_e12.b1 CHROMAT_FILE:
MSMg01no462_e12.b1 PHD_FILE: MSMg01no462_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:15 2005
         (237 letters)



>mm_chr11_45720346_45720981
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%), Gaps = 1/236 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgctaaaaatgacttttaaagggacagaaaaaaaggaacgggtgacaagaaatgaga 60
           |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 435 ggctgctaaaaatgacttttaaagggacag-aaaaaaggaatgggtgacaagaaatgaga 377

                                                                       
Query: 61  agtctaccaaggcgaagtgctggaggacacagtggctgaaagaaggccgctggcctctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtctaccaaggcgaagtgctggaggacacagtggctgaaagaaggccgctggcctctca 317

                                                                       
Query: 121 gtcaccgctctgcttctttcttcccttccttcgtcccaataccccaaagacgaggatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gtcaccgctctgcttctttcttcccttccttcgtcccaataccccaaagacgaggatcta 257

                                                                   
Query: 181 tacattaaaacaagggattagcatagaaacctatcagtgactcagccatagctagc 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tacattaaaacaagggattagcatagaaacctatcagtgactcagccatagctagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)