BAC Information

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BAC

Clone NameMSMg01-462K10
Chromosome11 (Build37)
Map Location 39,355,354 - 39,355,694
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462K10.T7 (MSMg01no462_k10.b1)MSMg01-462K10.TJ (MSMg01no462_k10.g1)
ACCAG547488AG547489
length778869
length of high quality
(start - end)
501 (46 - 546)160 (73 - 232)
definitionCHROMAT_FILE: MSMg01no462_k10.b1 PHD_FILE: MSMg01no462_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:44 2005CHROMAT_FILE: MSMg01no462_k10.g1 PHD_FILE: MSMg01no462_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGCTATTGCCCTGACTAGAGTCCAAGACCGCTTGTCAACCAAT
CTACAAGGTATGTGTTTGAAATGTAAGGCATAAGGCAATACAAATAAGTG
CCTTAAAATTCGAGCCCCATTAAAAATGGGGCACAGGGGGCTGGTGAGAT
GGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCGAAGGTCCGGAGTTCA
AATCCCAGCAACCACATGGTGGTTCACAACCATCCGTAACGAGATCTGAC
TCCCTCTTCTGGAGTGTCTGTTTTACAGCTACAGTGTACTTACAAATAAT
CAATAAATAAATCTTTTTTTAAAAATGGGGCACAGAGCTAAACAAAGAAT
TCTCACCTGAGGAATAGCAAATGGCTGAGAAGCACCTGAAAAAATGTTCA
GCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCA
CTTCACACCAGTCAGAATGGCTATGATCAAAAATTCAGGTGACAGCAGAT
GCTGGCGAGGATGTGGAGAAAGAGCAACACACCTCCATTGCTGGCGGGAT
TGCAAGATTGTACAACCACTCTGGAAATCAGTCTGGCGGCTCCTCAGAAA
TTTGGACTTAGTACTACTGGAGGAATCCGCAATACCTTCCCCTGGGCATA
TATCCAGGAAAATGTTCCCACCCGTTAAAAAGAAACCATGCTCCACCATG
TTCTAATAAAACCTTAATTTTAAAAATC
CATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGGCTAGAAGACAGGAGGGGGTTGAT
GGGTGGAGGAGCACCCTCTCAGTGTCAGAGTGAGAGGGGATGGGATAGTG
GGTTTCCAAAAGGTAGACCTGGGAAGGGAAAAACATTTTAAATGTAAATA
AAGAAAAAAAAAGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGCTTGTTC
TTTTTTTTTTTTTTCTCCCCCTCTCTTTCCTTCTTTTTCTTTCTCTTTCT
TCCTTCCTTCTTCCACCCTTTTTCCTCCTTTTTCCTCCCCTTCCCTTTTT
CTCCCTCCTCCTTTTTTTTTTTCCCCTCCCCTTTTCCGTGTGTTTTTTCT
TCCTTTCCTTTTTTTTCTTTCTTTTCCCCCCTCTTTTCCCCTTTCCTTCA
CACCTTTCCCTCTTCTCTTTTTCTTCTTCTCTTCCCCCTCTTCTTTCCTC
CTTTTCTCTCTCCCCTTTCTCCCCTTTTTCCCTTCCCTTTTCTCTTCTCT
TTTTTCCTCTTCCTCTTTCTTCTTCCTTCCTTCCCTCTCTCTTTTCTCTT
CTTTTATTTTTTCCATTTCCTCCCTCTCTTATTTCCATTTCCCTTTTTAT
TTCTCTTTCTCTCTTTTTTTCCTCCCCTTTATTCCTTCCCCTTTTCCTCT
CATTTCTCCTTCTCCTTCCTTTCCTTCTCTTCTTTTTTTCCTTCTTCCTT
TCCTTTTTCTCTCCTCCTCCCATTTCCCTTCCACCATTTTCTTTTTCCTT
CCCTTTCCTTTCTCTTCCTACCTTTCTTTTTTTCTCCTCTTTTTATCTTC
TCTCTCTTTCCCCCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_k10.b1 MSMg01no462_k10.b1 CHROMAT_FILE:
MSMg01no462_k10.b1 PHD_FILE: MSMg01no462_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:44 2005
         (501 letters)



>mm_chr11_39355354_39356254
          Length = 901

 Score =  594 bits (307), Expect = e-174
 Identities = 333/345 (96%), Gaps = 7/345 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagctattgccctgactagagtccaagaccgcttgtcaaccaatctacaaggt 64
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaattctaagctagtgaactgactagagtccaagaccgcttgtcaaccaatctacaaggt 282

                                                                       
Query: 65  atgtgtttgaaatgtaaggcataaggcaatacaaataagtgccttaaaattcgagcccca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atgtgtttgaaatgtaaggcataaggcaatacaaataagtgccttaaaattcgagcccca 222

                                                                       
Query: 125 ttaaaaatggggcacagggggctggtgagatggctcagtgggtaagagcacccaactgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttaaaaatggggcacagggggctggtgagatggctcagtgggtaagagcacccaactgct 162

                                                                       
Query: 185 cttccgaaggtccggagttcaaatcccagcaaccacatggtggttcacaaccatccgtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cttccgaaggtccggagttcaaatcccagcaaccacatggtggttcacaaccatccgtaa 102

                                                                       
Query: 245 cgagatctgactccctcttctggagtgtct---gttttacagctacagtgtacttacaaa 301
           ||||||||||||||||||||||||||||||   |    ||||||||||||||||||||||
Sbjct: 101 cgagatctgactccctcttctggagtgtctgaag----acagctacagtgtacttacaaa 46

                                                        
Query: 302 taatcaataaataaatctttttttaaaaatggggcacagagctaa 346
           ||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 45  taatcaataaataaatctttttaaaaaaatggggcacagagctaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)