Query= MSMg01no462_k24.b1 MSMg01no462_k24.b1 CHROMAT_FILE:
MSMg01no462_k24.b1 PHD_FILE: MSMg01no462_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:46 2005
(443 letters)
>mm_chr11_54470766_54471608
Length = 843
Score = 826 bits (427), Expect = 0.0
Identities = 436/439 (99%)
Strand = Plus / Plus
Query: 5 gaattcaactcaatgtcaggtgagtgagcataccctgaatacgcagagtgctgtttgtgg 64
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactcaatggaaggtgagtgagcatgccctgaatacgcagagtgctgtttgtgg 264
Query: 65 attccctgttaaaatgggtgttttaggaacaaacagcatgcttctttgctagttctaaga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attccctgttaaaatgggtgttttaggaacaaacagcatgcttctttgctagttctaaga 324
Query: 125 attaaagtaagatttctcctctcaagtttttgtctctacaattatgtaaatagaaacttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaaagtaagatttctcctctcaagtttttgtctctacaattatgtaaatagaaacttg 384
Query: 185 gagggatccttaaagactgccgtaaagagaagaaagaaagcagtcctgtgtaatctatgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagggatccttaaagactgccgtaaagagaagaaagaaagcagtcctgtgtaatctatgc 444
Query: 245 ccagctgtaaatagtcaaggcctgcctctcagctactaagtaccataggtgttctgttct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagctgtaaatagtcaaggcctgcctctcagctactaagtaccataggtgttctgttct 504
Query: 305 aaagagaacaagggttgatcctacctaccacttgctgagatgcaacgtttatttaatata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagagaacaagggttgatcctacctaccacttgctgagatgcaacgtttatttaatata 564
Query: 365 ggagaaatcactaaggacaacttctgtgtacaggtccacttttttttgcctcacttgaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggagaaatcactaaggacaacttctgtgtacaggtccacttttttttgcctcacttgaaa 624
Query: 425 gtttcagacaggaggaaag 443
|||||||||||||||||||
Sbjct: 625 gtttcagacaggaggaaag 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_k24.g1 MSMg01no462_k24.g1 CHROMAT_FILE:
MSMg01no462_k24.g1 PHD_FILE: MSMg01no462_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:47 2005
(387 letters)
>mm_chr11_54613258_54614044
Length = 787
Score = 629 bits (325), Expect = 0.0
Identities = 377/411 (91%), Gaps = 28/411 (6%)
Strand = Plus / Minus
Query: 1 cagggcagccagggctatgcagagagaccctgact--aaaa------------------- 39
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 696 cagggcagccagggctatgcagagagaccctgactcaaaaaccaaccaaccaaccaacca 637
Query: 40 ---aaccaaccaaccaaccaaccaaccaaacaaacaaacacaataatgagtgtgtgtgtt 96
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 636 accaaccaaccaaccaaccaaccaaccaaacaaacaaacacaataatga----gtgtgtt 581
Query: 97 tgtagtgcgttcttgtttcactattttcagaccttagttttgcacactagttatattgat 156
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tgtagtgcattcttgtttcactattttcagaccttagttttgcacactagttatattgat 521
Query: 157 tgagacaaaaacaaacatgtgggctctcaagagtttatttcaaggtctgtgagggtcata 216
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 520 tgagacaaaaacaaacatgtgggctctcaagagtttatttcaaggtctgtgaggatcata 461
Query: 217 aatgtttagtcaacaagtagttattttagagaccagtatatgttctcctgtgagacttca 276
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 460 aatgtttagtcaacaagtagttattttagagaccagtatatgttctcccgtgagacttca 401
Query: 277 tagtttctggggaccactcttctttgcttttatttctttatgttatgaattttgaaatca 336
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 400 tagtttctggggaccactcttctttgcttttatttctttatgttatgaaatttgaaatca 341
Query: 337 gaaatcggtgtattgcttataccctggtcccctgattgaagtgtgagtctt 387
||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gaagtcagtgtattgcttataccctggtcccctgattgaagtgtgagtctt 290
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
