BAC Information

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BAC

Clone NameMSMg01-462M04
Chromosome11 (Build37)
Map Location 59,740,550 - 59,931,711
singlet/doubletdoublet
Overlap geneMed9, Rasd1, Pemt, Rai1
Upstream geneRnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m
Downstream geneSrebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462M04.T7 (MSMg01no462_m04.b1)MSMg01-462M04.TJ (MSMg01no462_m04.g1)
ACCAG547572AG547573
length774869
length of high quality
(start - end)		382 (77 - 458)278 (76 - 353)
definitionCHROMAT_FILE: MSMg01no462_m04.b1 PHD_FILE: MSMg01no462_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:52 2005CHROMAT_FILE: MSMg01no462_m04.g1 PHD_FILE: MSMg01no462_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,740,550 - 59,740,930)(59,931,437 - 59,931,711)
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCTTTAATTATTACCGATTTGCACAGGGAACCATTTATTCCCAAGA
TGTTAATAATAAAAGCTGCCAAAGTGACACTGCAATCAGAAGCAAGCTTA
AAAACCGAGCAGTGATCGGTGCTGTTTGCTTCCCAGCCTGGGAAAGGAAC
GAGCCAGATGGAGAAAACTAAAGTGGTGACTCCCTCTCTGAACCCAGCCT
GGACAGCTAGAACAAAGCCTTGTTTGGGCTACTGTGCAAGCGAGGCCATC
TTGGTGAGCATTTCAGTCCCTCCTGCTTGTCATTCTTGGTTCTGGTCCCC
AGGGTTCCAGAAGCAGAGGCCTGCTTTCAGTACCCACCCTGGCTCCCCAT
TTTCCCTCTCCTTTGGCCTGGNTTTGCCAAACTGGGTCAGGCTGGATGAG
GACAGGATAGCTGTTAGAATTGGCTACTTTGCTGTGTCAAGCGGTAGATG
CCGGCTTAATCTCCAAAATACCATTTAACATACATCTTGACATTTGGATT
AACGTAAAAGGTCTTTACTCATAAGTTAATGGCCCGTGCGTGTATCTGAT
GACCACGTATAGTCCAGGTTTTGTTTCCCAACTTTTGTCCTGATTACCAA
ATAATTTCTATTTTTGCACCCTGGTAACCTCCACTCCTTATTAACAATAA
TGCTTCTCGGCTTTCTACAATAACCCTCGCCCCGTTCTCCCAGACAAATT
TCATTATCTCTCCCTCTTTATATC

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACACATCTCCTCAGATGGGTAAATT
CCACCCAGGGGTGGTGCCCAGCCCACAGGAAGGAACTCAGATAAATCAAT
CATGTGCAGACAAAGAATCTTTGCCATCACCTGGCAGACTCATCCATGCA
GGTGAAGTGAGCTGTCCTTTAATAGCCATCACATTAATAAGCTTATTAAT
AAAATTTACAGGACTGATGGCTGCATGCTGACAACATGCCTACTGTACCT
TTTCAATAGCACACACTGATGGTGGCAGGCAGTGACGGGGGGGGGGGGGG
ATCTCCTCTTTTTTTTCTTTCTTTCCTTTTCTCCCTCGTTTTTTCCCCCC
TTTTCCTTTTTCTTCCTTGCTTTTCGTCCCCCTTTCTCCCCTTTTTTTCT
CCCCCTTTCTTTCTGCTCTTATCCTTTTTTACTAGCCTCCCTTCTCTTTT
CTCTGTACTCATCCCCTTTACCCCTTTATCTTTGTATTTTTTTCCCTTAT
TTTTTTTCTTTCTCTCTCTTGCTTCCTCCTTCCTTCTATTTTTACATTTC
CTTTTTCTTCATTTTTATCCCTCTCTCTTTCTCCCCTTCATTCTTTTTTT
TTCTTCATGTCATTCTTTGTCCCCTTTTTTTCACTCCCCTTTTCTCCCCT
ATCCTTCCTTTCTTTCTTTTTTCTTCCCTCTCTTTTACTTTTTTCTCTTC
TTTCTTAATCCTCTCTCCCTTTCTCCTCTCCGTCCTTCTTTTTCCTATTC
CTTTTTCTCTTCTTTTCCTTCCTTCATATTTTCCTCACTCTCTTTTTCTC
CCATCCTTTCTCCCTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_m04.b1 MSMg01no462_m04.b1 CHROMAT_FILE:
MSMg01no462_m04.b1 PHD_FILE: MSMg01no462_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
         (382 letters)



>mm_chr11_59740350_59741131
          Length = 782

 Score =  692 bits (358), Expect = 0.0
 Identities = 375/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagggaaccatttattcccaagatgttaataataaaagctgccaaagtgacactgcaat 60
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 201 acagggaaccatttattcccaaggcgttaataataaaagctgccaaagtgacactgcaat 260

                                                                       
Query: 61  cagaagcaagcttaaaaaccgagcagtgatcggtgctgtttgcttcccagcctgggaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagcaagcttaaaaaccgagcagtgatcggtgctgtttgcttcccagcctgggaaag 320

                                                                       
Query: 121 gaacgagccagatggagaaaactaaagtggtgactccctctctgaacccagcctggacag 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 gaacgagccagatggagaaaactaaagtggtgactcccgctctgaacccagcctggacag 380

                                                                       
Query: 181 ctagaacaaagccttgtttgggctactgtgcaagcgaggccatcttggtgagcatttcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagaacaaagccttgtttgggctactgtgcaagcgaggccatcttggtgagcatttcag 440

                                                                       
Query: 241 tccctcctgcttgtcattcttggttctggtccccagggttccagaagcagaggcctgctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 tccctcctgcttgtcattcttggttctggtccccagggttccagaagcagaggcctgctc 500

                                                                       
Query: 301 tcagtacccaccctggctccccattttccctctcctttggcctggntttgccaaactggg 360
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ccagtacccaccctggctccccattttccctctcctttggcctggttttgccaaactggg 560

                                
Query: 361 tcaggctggatgaggacagga 381
           |||||||||||||||||||||
Sbjct: 561 tcaggctggatgaggacagga 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no462_m04.g1 MSMg01no462_m04.g1 CHROMAT_FILE:
MSMg01no462_m04.g1 PHD_FILE: MSMg01no462_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:52 2005
         (278 letters)



>mm_chr11_59931237_59931914
          Length = 678

 Score =  532 bits (275), Expect = e-155
 Identities = 275/275 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatctcctcagatgggtaaattccacccaggggtggtgcccagcccacaggaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acacatctcctcagatgggtaaattccacccaggggtggtgcccagcccacaggaaggaa 416

                                                                       
Query: 61  ctcagataaatcaatcatgtgcagacaaagaatctttgccatcacctggcagactcatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ctcagataaatcaatcatgtgcagacaaagaatctttgccatcacctggcagactcatcc 356

                                                                       
Query: 121 atgcaggtgaagtgagctgtcctttaatagccatcacattaataagcttattaataaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 atgcaggtgaagtgagctgtcctttaatagccatcacattaataagcttattaataaaat 296

                                                                       
Query: 181 ttacaggactgatggctgcatgctgacaacatgcctactgtaccttttcaatagcacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttacaggactgatggctgcatgctgacaacatgcctactgtaccttttcaatagcacaca 236

                                              
Query: 241 ctgatggtggcaggcagtgacgggggggggggggg 275
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ctgatggtggcaggcagtgacgggggggggggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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