BAC Information

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BAC

Clone NameMSMg01-463I08
Chromosome11 (Build37)
Map Location 8,618,450 - 8,618,689
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665380, Tns3
Downstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463I08.T7 (MSMg01no463_i08.b1)MSMg01-463I08.TJ (MSMg01no463_i08.g1)
ACCAG548154AG548155
length755775
length of high quality
(start - end)
241 (81 - 321)248 (78 - 325)
definitionCHROMAT_FILE: MSMg01no463_i08.b1 PHD_FILE: MSMg01no463_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:58 2005CHROMAT_FILE: MSMg01no463_i08.g1 PHD_FILE: MSMg01no463_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGCAACACAATC
CGCGGNAATCTCTTTATTGCCCAAAACAGCCTCAAACTCAGATAGGCTCC
TGCCTCTGCCTCCCAAGTGTTGTATTAAAGTCATGTGCCACCACACCTGC
AGGTAGGCTTCTTTTCACCCACCATATAAGTGTGTTCTCGAGGCTTGCCA
ACACCCTGCAGACTGTTGGGTTCTGTGCTAGGTATGGTTGGCACCACTAC
AGTGTTCATTAACTAGGAGGACACTGACAAGCCTGTCTCAAGAATGTATT
AGATGGGGGTCGGAGAGATGTTTCATCTTTTAAGAGCACTGACTGCTCTT
CCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGCGGTTCACAATCA
TCTGTTAATGGGGGTCCAAATGCCCCCCTTCTGTTATGTCTGACAACAGC
TACAGTGCACTCCACATATTGTTTATATAACCCAGAATGTATTATATAAA
GCCGTATCTATCAACCATGTGCCATTAAATGCCGATAAAGCATCGTCATG
TGTCTGTCTTTTCCCATCTTAATACATATGCCAACTTTTTTTTGTCAGCA
TCGTATACCCGTCATTATTACCACTATTGGGCCACTCTTTATTTATCCAT
GTAAAAACCCAGCATAGGGTTTATCCTCCATGCTTCCGTCCCATTTCCCC
TAATTTAACCTTTAAACACTTTCATTATCCCCGCGATACCTGAGCTTCCT
TCTCA
CTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGAAATTCATTTGGGAAGAGGAACCCTAA
GATAAGAAAATGTCTCCATCAATTGGCCTGTAGGCAAGCCTGGGGGATAT
TCCCATGATTAATGATTGCTGTGGGAAGACCCAGCCCACTGTGGGTGGTG
TGCTACCCCCACCCTGGGCAGGTTAGTCTTGCGTCATCTAAGAAAGCAGG
CTGATCAATTCATCTGGAACAAGCCGGTGAGCAGTGTTCTTCTACAGCCT
CTGCTTCTGTTCCTGCTTCCAGATCTTCTCCTTGACTTTCTTTCCTGAAT
TTCCTTCATAATGGAAGTTGTAAGATGAAATAAACCCTTTCCTCTTCAAC
TTGTTTTTTGGATAATATTTTATCACAGCAACAGATAGTAAACTGGTACT
TACCTTATATGTTAAGGCTTGTTTTCTTAAGTCTCATTTCTTTTTATTCC
ACAGATACCCCTGGTTTCTCCTCATTGACAGTCCTTAAGTTGCCTTGACT
GTTGTACTTTTCCGTATCTTCCCCCCTTTTTAAGTATTTGTTCCCACGCC
CTATTTCTTGTTTGCTCTCCCTTATTCTCCTTTGTTTCCATTACTCCCCC
TTTGTGTCCTCTGCTTACCCTTTCTTTCCTTTTACCTCCCTATTACCTTC
ACTAATTCCTCTTTCTTGACTCTTTCTCTTTTCTTTCCTAATTTGTCTTG
CCGCCTTTTTCTCTCTCCCTTCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_i08.b1 MSMg01no463_i08.b1 CHROMAT_FILE:
MSMg01no463_i08.b1 PHD_FILE: MSMg01no463_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:58 2005
         (241 letters)



>mm_chr11_8618250_8618890
          Length = 641

 Score =  397 bits (205), Expect = e-115
 Identities = 232/241 (96%), Gaps = 2/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaaactcagataggctcctgcctctgcctcccaagtgttgtattaaagtcatgtgcca 60
           ||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ctcaaactcagatatactcctgcctctgcctcccaagtgttggattaaagtcatgtgcca 260

                                                                       
Query: 61  ccacacctg-caggtaggcttcttttcacccaccatataagtgtgttctcgaggcttgcc 119
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacctgcca-gtaggcttcttttcacccaccatataagtgtgttctcgaggcttgcc 319

                                                                       
Query: 120 aacaccctgcagactgttgggttctgtgctaggtatggttggcaccactacagtgttcat 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 320 aacaccctgcagactgttgggttctgtgctaggtatggttggcaccactacagtgtccag 379

                                                                       
Query: 180 taactaggaggacactgacaagcctgtctcaagaatgtattagatgggggtcggagagat 239
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 380 gaactaggaggacactgacaagcctgtctcaagaatgtattagatgggggccggagagat 439

            
Query: 240 g 240
           |
Sbjct: 440 g 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)