Query= MSMg01no463_i24.b1 MSMg01no463_i24.b1 CHROMAT_FILE:
MSMg01no463_i24.b1 PHD_FILE: MSMg01no463_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:01 2005
(617 letters)
>mm_chr11_84084738_84085755
Length = 1018
Score = 1168 bits (604), Expect = 0.0
Identities = 613/616 (99%), Gaps = 1/616 (0%)
Strand = Plus / Minus
Query: 3 gaattctcagagg-attacggctccgtgttccaataatgagattcttaaggcaagcgtta 61
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 gaattctcagaggaaatatggctccgtgttccaataatgagattcttaaggcaagcgtta 759
Query: 62 cttacaatcactccgcaaaaggagcgagccgagcccctatatcttacaaattagaattta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 cttacaatcactccgcaaaaggagcgagccgagcccctatatcttacaaattagaattta 699
Query: 122 agaaacccagcgacagtcctggacgatcattactcttctgctgctccaaggattctgggc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 agaaacccagcgacagtcctggacgatcattactcttctgctgctccaaggattctgggc 639
Query: 182 tttggtctatttttagtgcagaaaactgttaagttcttaaaaaggtaatcataataagat 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tttggtctatttttagtgcagaaaactgttaagttcttaaaaaggtaatcataataagat 579
Query: 242 gaaaaatttgccataattagctccctataaaggcaaattccagccccattttggttcata 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaaaaatttgccataattagctccctataaaggcaaattccagccccattttggttcata 519
Query: 302 ctggcagatccttctacctctaatcattacccctttctgccagaaagtcttgacttcctc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctggcagatccttctacctctaatcattacccctttctgccagaaagtcttgacttcctc 459
Query: 362 caagtgagaattaacaatccttgcattaaaatttgaaaaagaaagtaggatttctgaggg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caagtgagaattaacaatccttgcattaaaatttgaaaaagaaagtaggatttctgaggg 399
Query: 422 aaaataaacagcaagtagctctagattatacaactcttttgcagaaagctgtctcatggg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aaaataaacagcaagtagctctagattatacaactcttttgcagaaagctgtctcatggg 339
Query: 482 gaagttaaaatagtcctttgtgccaatatttccacccctctcaaagacctggtttcctca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gaagttaaaatagtcctttgtgccaatatttccacccctctcaaagacctggtttcctca 279
Query: 542 ccaggcagccattccagggtagcaaaggtaatgaactcttcctataatgacacgtttctt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccaggcagccattccagggtagcaaaggtaatgaactcttcctataatgacacgtttctt 219
Query: 602 agagtggctacctata 617
||||||||||||||||
Sbjct: 218 agagtggctacctata 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_i24.g1 MSMg01no463_i24.g1 CHROMAT_FILE:
MSMg01no463_i24.g1 PHD_FILE: MSMg01no463_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:01 2005
(512 letters)
>mm_chr11_83944457_83945370
Length = 914
Score = 453 bits (234), Expect = e-131
Identities = 377/514 (73%), Gaps = 136/514 (26%)
Strand = Plus / Plus
Query: 1 catgaagggtagacatcaatgtatttaagaaaagaatagtggctcatgcctgtaatgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 catgaagggtagacatcaatgtatttaagaaaagaatagtggctcatgcctgtaatgcca 394
Query: 61 gcacacaggaggtcagcctacgcaaaaaattccagttcagtccggtgcatgtgaccctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gcacacaggaggtcagcctacgcaaaaaattccagttcagtccggtgcatgtgaccctga 454
Query: 121 ctcaaaaaatggataaattaaaatgtccaagaggagccgggcagtggtggcacatgcctt 180
||||||||||||||||||||||||||||||
Sbjct: 455 ctcaaaaaatggataaattaaaatgtccaa------------------------------ 484
Query: 181 caatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggccagcctggtc 240
Sbjct: 484 ------------------------------------------------------------ 484
Query: 241 tacagagtgagttccaggacagccagggctacacagagaaaccctgtctggaaaaaccaa 300
||||||||||||||||
Sbjct: 485 --------------------------------------------tgtctggaaaaaccaa 500
Query: 301 aaaaataaaaaataaaatgtccaagagggatgaaaattaaatggattaaaatgtatccaa 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 aaaaataaaaaataaaatgtccaagagggatgaaatttaaatggattaaaatgtatccaa 560
Query: 361 agggatccaacaaagtatgatgtca--agcgtgaaaatcacacaaataatgaaacccatt 418
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 agggatccaacaaagtatgatgtcataagcgtgaaaatcacacaaataatgaaacccatt 620
Query: 419 acgttaacttaaaaattagcgcaaaaactaaaaatgtcagggtgtggtgggatgtctctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgttaacttaaaaattagcgcaaaaactaaaaatgtcagggtgtggtgggatgtctctg 680
Query: 479 tcagtgaagtgtttgaatttaaacctcggtgccc 512
||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagtgaagtgtttgaatttaaacctcggtgccc 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 914
Length adjustment: 10
Effective length of query: 502
Effective length of database: 904
Effective search space: 453808
Effective search space used: 453808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
