BAC Information

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BAC

Clone NameMSMg01-463N24
Chromosome11 (Build37)
Map Location 99,994,579 - 99,995,090
singlet/doubletsinglet
Overlap geneKrt15
Upstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13
Downstream geneKrt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463N24.T7 (MSMg01no463_n24.b1)MSMg01-463N24.TJ (MSMg01no463_n24.g1)
ACCAG548424AG548425
length757762
length of high quality
(start - end)		555 (82 - 636)513 (83 - 595)
definitionCHROMAT_FILE: MSMg01no463_n24.b1 PHD_FILE: MSMg01no463_n24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:27 2005CHROMAT_FILE: MSMg01no463_n24.g1 PHD_FILE: MSMg01no463_n24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAAAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAA
ATCCGCGGAATTCTTTCAAAAATTACTCAGACTTTCAAAGAATAGCTAGT
ACCAATACTCCTCAAATATTCTACAAATAGAAACAGAAGGAACATTGTCA
AATTTATTTCATGTGGCCACAATCATCTGATGTCTGAACTACAGCAAGAC
TTAATAAAGACAATTTTAAGCCAGCTTCCCTCATGAACCTTAAAGTAAAA
ATATTCAATAAAATAGTCACAAGTCAAATTGAAAAATACAGCAAAAATAT
AATTCACCATGATCAAAAAGGCTTCATCCAAGAGATTTATGAATGTTTCA
ACGTAAGAAAACTTATCAATGCAATCCACCATATAAACAAACAATTTTTT
AAAAACATCATGATAAACTCATTAGATGCTCAAAATGCCTTTGACGAAAT
CCAACACCCTTTCATGATAAAAAAGTCTTGAAGAGATCAGGGATAAAAGG
TATATACCTAAACATACTAAAAGAAATGTACACCAAGCAGATAGCCAGCA
TTAAATTAAGTGGAGAGAAACTTAAAAGTAATTCCACTAAAACCAGGGAC
AGAATAAAGCTTTCCACTCTCTCCACATCTGCTCAATAAAGTACTTGATG
TTTTAGCTACAGTATTAAGAAAACTAGAGGAGATCAAGGGGATACCAATT
GGAAAGGAAGATGGCCAAGTATTCATATTTGCCGATGATATGAGAAATTA
CCTAAAG

TAAATACACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTCAACTGGCTGGC
CAGGTCAATGTGGAAATGGACGCAGCACCTGGGGTGGACCTGACCCGCAT
GCTGGCAGAGATGAGGGAGCAGTATGAAGCTATTGCAGAGAAAAACCGTC
GGGATGTAGAGGCCTGGTTCTTCAGTAAGGTGGGTCTGACCCCCTCCTCA
CACCCCCAACTCCAGCTCTGCTCTACCTCTCCTCCCCTCTCCAGAAGCCT
CTGAGGAGGCCCATGAGGCTCATGTTTCTTATCCGTGACTTGCAGACTGA
AGAGCTGAACAAGGAGGTGGCGTCTAACACAGAAATGATCCAGACCAGCA
AGACGGAGATCACAGACCTGAGACGGACCCTGCAGGGGCTAGAGATTGAG
CTGCAGTCTCAGCTCAGCATGGTACGGTCACTCTGGCTTATTGGGCAACA
CATGAACCCATTGTCCATGGCTGGTAAAGCCTCAGCCCTCACTCCCAACA
GTGGTTATTCTGGGCGGGCCGTCTCATCCTTCCTATCCCTCTACCTTCAG
TGGCTTTGCCTCCTAGTCTGATGAGTCTATAAATCTGTTGCCCTACCAGA
AAGCCGGGCTGGAGAAATCCTCTGGCAAAGGTGGAGTGCCGCTTATGCCA
CCCAGTTGGCGCAGATCTAGGGGGGTCTTTACCGGTCTGGAGACCCCCCT
GAATGGACCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_n24.g1 MSMg01no463_n24.g1 CHROMAT_FILE:
MSMg01no463_n24.g1 PHD_FILE: MSMg01no463_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:27 2005
         (513 letters)



>mm_chr11_99994379_99995290
          Length = 912

 Score =  930 bits (481), Expect = 0.0
 Identities = 505/513 (98%), Gaps = 1/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtcaactggctggccaggtcaatgtggaaatggacgcagcacctggggtggacctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 712 agcagtcaactggctggccaggtcaatgtggaaatggacgcagcacccggggtggacctg 653

                                                                       
Query: 61  acccgcatgctggcagagatgagggagcagtatgaagctattgcagagaaaaaccgtcgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 acccgcatgctggcagagatgagggagcagtatgaagctattgcagagaaaaaccgtcgg 593

                                                                       
Query: 121 gatgtagaggcctggttcttcagtaaggtgggtctgaccccctcctcacacccccaactc 180
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 592 gatgtagaggcctggttcttcagtaaggtgggtctgacctcctcctcaca-ccccaactc 534

                                                                       
Query: 181 cagctctgctctacctctcctcccctctccagaagcctctgaggaggcccatgaggctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cagctctgctctacctctcctcccctctccagaagcctctgaggaggcccatgaggctca 474

                                                                       
Query: 241 tgtttcttatccgtgacttgcagactgaagagctgaacaaggaggtggcgtctaacacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtttcttatccgtgacttgcagactgaagagctgaacaaggaggtggcgtctaacacag 414

                                                                       
Query: 301 aaatgatccagaccagcaagacggagatcacagacctgagacggaccctgcaggggctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aaatgatccagaccagcaagacggagatcacagacctgagacggaccctgcaggggctag 354

                                                                       
Query: 361 agattgagctgcagtctcagctcagcatggtacggtcactctggcttattgggcaacaca 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agattgagttgcagtctcagctcagcatggtacggtcactctggcttattgggcaacaca 294

                                                                       
Query: 421 tgaacccattgtccatggctggtaaagcctcagccctcactcccaacagtggttattctg 480
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tggacccactgtccatggctggtaaagcctcagccctcactcccaacagtggttattctg 234

                                            
Query: 481 ggcgggccgtctcatccttcctatccctctacc 513
           ||||| ||||||||||||||||| |||||||||
Sbjct: 233 ggcggtccgtctcatccttcctacccctctacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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