NNGGAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAAAATC
CGCGGAATTCTATTCCCAATTCCCAAAAAGTCACCTTGGAAAGCTGAAAG
CTATATATTTAACTCCTATAATGTTACTGCTGCTCAGAATATGTAGACTT
GATTCTTGGAGTTGGCCTCAGGTCCTATAGAATATTCCTTGAAATACCAT
TCATAGTGGCAATTTTATCAGTTACGTGCAGATTCCTTTTTTTTTTTTTT
AGAACCAAAGTGATTGCTGATAAGTTTTGTGATAGGTGGTCAGGCTGTTT
TGTGCTATTTTTGGTTCAGAATAAAGAATCTTTTGGTTAAGCCATCAAAT
TTTCTTATACCTTCTTTTGTTGCTTCTATACCATTCTGTGAAGAAGTTTT
CTTGAAAAGAAATGCCAAAAGATTTTCATCAATGAAAAAAATCATTTACA
TTTAACATGTGTGCAGGACCATAAGTCAGGTCTTTGCCAGCGGTTCTCAA
CCTGTGGGTCAAAACCTCTTTGGGGTCGAATATCAGAAATCCTGCATATC
AGATGTTTATATTACGATTTACAACAGTGTCAAAAATTACAGTTATGAAG
TAGCAATGAAATTCTAATTTTATGGTTTGGGTCAGCACTCCATGAGGAAA
TGTGTTAAAGGATAGCAGCATTTAGTATTGTTGAGAACCCCTGTACTTGA
CAGTCCCTCCTAGAAAAAAAGTGGCTTGGTGGTCCCACTGGTGAGCTTCT
GAGGTCCGAAACATATGGAGN

NNNCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGCGAAATACAGAGGCTGATCAGTTTGCTTGAC
TGTGAGGACCAAGCAGGCAGGATGAAGACGCTGAAGAGAGTCACCAATGT
AGAGAAGGTACTAGAAACTGAAGAGACAGGAGACTGGAGAGCCTGCCCTA
GCTGCACTACAAACTGGCCACTTCCCTTCAGGCAGCTTCATCCTCTCTTG
AGTGTTCTTTATCCTCTCATCTGAACTGATGATGTTCAACCATAATGGAG
GTTGTGGGAGTGACTTGACATAATCATTTTTAGTTTTCGAAGTCAACCTA
GAGTGCATACATTGCTGATCTCTAGAGTTTAGTTCTGGGTTCTCCAACTC
AGTCTTTCAGATGTTCACAGAAAAACGCCCAGGTAAAGTGTGAAAACACA
GTATGGAAGGGTAGAGCAAAAGGTGACACAATCAACCACGCTCCAATCCC
TAGGGAGAGGCACAGGTGTGTCCCCAGCACATCCTCCTCACCAACCATCC
AAAGACACAACAGACTTTCAGGACAGGAAAATCTTGTCATCATCGGGAAG
GCGGACATTTCATTCACTGTGAGCTCTAGGGCAGAGCCCCTNACCAACAA
CTTGCCTTGCGTGGCACAGCAACCTGGAGAAATTCAAGAATGATTTGCCG
GTGGAACAGAAAATAAGAAGTTCTTCTTTTTCCCTTCTGCCAATTCCCAG
AACT

Query= MSMg01no463_p21.b1 MSMg01no463_p21.b1 CHROMAT_FILE:
MSMg01no463_p21.b1 PHD_FILE: MSMg01no463_p21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:36 2005
         (296 letters)



>mm_chr11_66425591_66426286
          Length = 696

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccatcaaattttcttataccttcttttgttgcttctataccattctgtgaagaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 agccatcaaattttcttataccttcttttgttgcttctataccattctgtgaagaagttt 289

                                                                       
Query: 61  tcttgaaaagaaatgccaaaagattttcatcaatgaaaaaaatcatttacatttaacatg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tcttgaaaagaaatgcgaaaagattttcatcaatgaaaaaaatcatttacatttaacatg 229

                                                                       
Query: 121 tgtgcaggaccataagtcaggtctttgccagcggttctcaacctgtgggtcaaaacctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgtgcaggaccataagtcaggtctttgccagcggttctcaacctgtgggtcaaaacctct 169

                                                                       
Query: 181 ttggggtcgaatatcagaaatcctgcatatcagatgtttatattacgatttacaacagtg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttggcgtcgaatatcagaaatcctgcatatcagatgtttatattacgatttacaacagtg 109

                                                                   
Query: 241 tcaaaaattacagttatgaagtagcaatgaaattctaattttatggtttgggtcag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tcaaaaattacagttatgaagtagcaatgaaattctaattttatggtttgggtcag 53


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no463_p21.g1 MSMg01no463_p21.g1 CHROMAT_FILE:
MSMg01no463_p21.g1 PHD_FILE: MSMg01no463_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:36 2005
         (553 letters)



>mm_chr11_66238775_66239727
          Length = 953

 Score = 1015 bits (525), Expect = 0.0
 Identities = 546/553 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggctgatcagtttgcttgactgtgaggaccaagcaggcaggatgaagacgctgaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agaggctgatcagtttgcttgactgtgaggaccaagcaggcaggatgaagatgctgaaga 260

                                                                       
Query: 61  gagtcaccaatgtagagaaggtactagaaactgaagagacaggagactggagagcctgcc 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 gagtcaccaatgtagagaaggtactagaaattgaagagacaggagactggagagcctgcc 320

                                                                       
Query: 121 ctagctgcactacaaactggccacttcccttcaggcagcttcatcctctcttgagtgttc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 ctagctgcactacaaactggccacttcccttcgggcagcttcatcctctcttgagtgttc 380

                                                                       
Query: 181 tttatcctctcatctgaactgatgatgttcaaccataatggaggttgtgggagtgacttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatcctctcatctgaactgatgatgttcaaccataatggaggttgtgggagtgacttg 440

                                                                       
Query: 241 acataatcatttttagttttcgaagtcaacctagagtgcatacattgctgatctctagag 300
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataatcattttgagctttcgaagtcaacctagagtgcatacattgctgatctctagag 500

                                                                       
Query: 301 tttagttctgggttctccaactcagtctttcagatgttcacagaaaaacgcccaggtaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagttctgggttctccaactcagtctttcagatgttcacagaaaaacgcccaggtaaa 560

                                                                       
Query: 361 gtgtgaaaacacagtatggaagggtagagcaaaaggtgacacaatcaaccacgctccaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgaaaacacagtatggaagggtagagcaaaaggtgacacaatcaaccacgctccaat 620

                                                                       
Query: 421 ccctagggagaggcacaggtgtgtccccagcacatcctcctcaccaaccatccaaagaca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 ccctagggagaggcacaggtgtgtccccagcacatcctcctcaccaaccaaccaaagaca 680

                                                                       
Query: 481 caacagactttcaggacaggaaaatcttgtcatcatcgggaaggcggacatttcattcac 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 caacagactttcaggacaggaaaatcttgtcatcatcgggaaggtggacatttcattcac 740

                        
Query: 541 tgtgagctctagg 553
           |||||||||||||
Sbjct: 741 tgtgagctctagg 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)