BAC Information

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BAC

Clone NameMSMg01-464C09
Chromosome11 (Build37)
Map Location 86,107,283 - 86,107,437
singlet/doubletsinglet
Overlap geneThrap1
Upstream genePpm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464C09.T7 (MSMg01no464_c09.b1)MSMg01-464C09.TJ (MSMg01no464_c09.g1)
ACCAG548633AG548634
length797776
length of high quality
(start - end)
60 (78 - 137)155 (128 - 282)
definitionCHROMAT_FILE: MSMg01no464_c09.b1 PHD_FILE: MSMg01no464_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:48 2005CHROMAT_FILE: MSMg01no464_c09.g1 PHD_FILE: MSMg01no464_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTAAACTTGTGGCCGCAATACGAATCACGATACAAAGAGGATCCGNG
GAATTCAGTTTTTCCGCTGCTGATGGCGAACACAGGGTGTTCCAGAGCAC
ATGTCACTGCCACAGCAAGTATCTGGGCAGTACCAGCCATTTCAGACTAT
CAGACACAGCCTAGTACACTGGCAGGAGGCCAGTCAGTAGAAGCTGTCAT
GGTCAACAAACTCTAGAGGGATTAGATTGTGAGTCACTGTATGACATATT
CTCCCAAAGAAGTAGAAAATTTGAACTTCAGACAGCTTGGTAAGACTAGG
AGCTGATGACCGAATTATTGCCTACTTACTGTTGACATCATCCCAAAACC
TCTCCATTCCACATAAGATGCACATAGTTCATATTGCCTACTTTCCCCAT
TTCCAACATTGTTAGATCATTACGCTACCTGCTTGCACTCCCTATTGCGC
CTCCGTCACTCCACTTTGTTTGTAACCCTGGTTACCATGGTTTTTTTAGA
TCTTTCCTCTCATGTTGTCCTCTTTTTCGCAGTAGCGCACATGTTCTCGT
TCCGACCCCCACCATGTCCTGACCCCATCATCTTGTTTTGATTTCCTCTC
CTTATCTTTTCCCCTCCCTTATACGTACACCGCCATTCCCCCGCGTGTTC
CTTCTCCTTTTGTCCCTCCGTTTTTTTTTTTGATCCTAACCCCTTTCATT
TTCCCCTCTTTCGCTTGACGCCCTATATCTTTTTGCCCCCTTTTCTTCTC
TCTTTTTTATTCCCCCGTTTACCCTATCTCCCTTTCCTATCCCATCT
TCCTATGATATTGATAGCCCGGGCGGCCGCCTTTTTCAAACATTAGGNGA
ACTATAGTATGTCTAAACAATTCTGAGGACACTTGCAGGAATTGCTTATC
TTTCATTCAGCGAAGTCTTTACGTTTAGCTGCTGGCACCTTTACCTAATG
AAACATCTCACCACCCCAGTTAAAGCCATTACTTTAATGCAGTTCTGAAA
TAAGCAAAAGTAAATGTGTTGTTCATTTGCACATAAAACTCATGTTTCTG
GTTATTTCTTGAGACTTACACATGTATAGAAAGGAGCAAGGAATAGAACA
AAAGGAGGTTCTTTTTTTACTGGCAGGAAGTGTAATACCTCTTGGACATG
GTGTTGTATATTTTAAATCCCCAACACTCACGACGCACAGACAGGTGGAC
CTCTGAGTTTCAAGATAGCTAGTACTTTACAGCGAGATTCTGTCTCAATA
AAAACGGTTTCTTCGGCAACGATACCCCCACTCATAATTATCTTTCATCA
CGATATATTAAGCACTTCGTGAATTATACTTCTCTATCCCTTTTTGGGTT
CACTATCATCACATGACTACATTTCAATACTTTTACTTTCTTCATTACTA
CATCCTAATAACTTTTCATACGCTAAATCTCTCCCTTTCCATTTTTCTGT
CCATATGTTCCTTTCCTTCTTTCCTCCCCCCTCCTTTCTCCCCCTAGACA
TTTTCCTCACCACCCCTTGTCTCCCACATATACTTTACTCGCCACACCAC
TTCCTTTTTTTCTTATAATAAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_c09.g1 MSMg01no464_c09.g1 CHROMAT_FILE:
MSMg01no464_c09.g1 PHD_FILE: MSMg01no464_c09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:48 2005
         (155 letters)



>mm_chr11_86107083_86107637
          Length = 555

 Score =  269 bits (139), Expect = 6e-77
 Identities = 151/155 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctgctggcacctttacctaatgaaacatctcaccaccccagttaaagccattactttaa 60
           ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gctgcaggcacctttacccaatgaaacatctcaccaccccagttaaagccattactttaa 296

                                                                       
Query: 61  tgcagttctgaaataagcaaaagtaaatgtgttgttcatttgcacataaaactcatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 295 tgcagttctgaaataagcaaaagtaaatgtgttgttcatttgcacataaaactcagggtt 236

                                              
Query: 121 ctggttatttcttgagacttacacatgtatagaaa 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 ctggttatttcttgagacttacacatgtatagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)