BAC Information

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BAC

Clone NameMSMg01-464F02
Chromosome11 (Build37)
Map Location 64,617,850 - 64,618,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
Downstream geneLOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd, Map2k4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F02.T7 (MSMg01no464_f02.b1)MSMg01-464F02.TJ (MSMg01no464_f02.g1)
ACCAG548762AG548763
length750751
length of high quality
(start - end)
381 (47 - 427)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no464_f02.b1 PHD_FILE: MSMg01no464_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005CHROMAT_FILE: MSMg01no464_f02.g1 PHD_FILE: MSMg01no464_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCANAGATCCGC
GGAATTCTCAAAATTTCTCCCCAATCTTATTTTAATCCTCCATTGAAACA
AAGCGACATCTAAGGTCATGCAAGCATGTCAAACTAAGCCCTGTGAATGA
GTATACCCCAAGACTATAGCAGAAGATGAAAGAATGGATGATTTATGACA
ATCACCAAGTCATCTCCTAGAACTCACTGACTCGTGGGAGCAGATTCAAC
ATTTCTTCTGGTTCTACATTTAGCGACAACCCGTTGGCTGTTTGAAAATG
GCCAGAACAGGAGTTTTGCCAGAATGATTAAGAGAAAAGCACAGCACATC
TGCGCTTTCTTGGTGAGTATGCTGGCTTGCCAGCACACCACTGTGTGTGT
GGTGGAGGTGGGCAGTGGTGGAGGGAGCCCCAATCAAATGTGAGAAGAGC
AGATGAAGTCCTGAGGGAATATGTTTATAGACATGAGCATGACCATGTCA
AGGACCCAGTACTTCAGACCCACAGAAATCGTAAAGCCTTCCCAATACAG
GTTAAGCTCACAAATGGCAAAATCCTCTACTAGTCCGTAAATTTTAACAG
TGTTGATCATATGTGAGCGCCTGTGGGTGATTGGTCTCGGTTCCGCCTAA
TCCCGCCACTGCTATCTCCTTCTTTTTCAAGCTTACCGACGGACCCCGTT
TTTCTATGGCGCCTTCTTTATTAGCCTATGTTACACCTTTTTTTTTCTTG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGATCCACTAGCTTCTGCCT
CCTGAGTGGTAGGATTAAATGTGTACACCACCACATCTGGCACATTAAAA
AAAATGTTAGAAATTCCAGTAAAAATTCATGTAGGAAACAGGCAGTGGTG
GCGCATGCCTTTAATCTCATCACTGGGAAAGCAGAGGCAGGTGAGTCTCT
CAGTTTGAGGTCAGCCTGGTCTAGAGTGTGAGTTCCAGGACAACTAGGGC
TACATTGAGAAAACTTGTCTGATTTTTTAAAAATCAAAACAACAAACAAA
AAAATCCATTTAGGAGAACCTTTTCATACTAAATCCCATACAGAAAACAA
AAGTGAAGCCCTGTTATTGTTGCTCTAGGCACACATCTGTCGGATATTCT
CAAACTGAGCATACTTTAAGCTATAGGAAGTATTTTCACCGGTGGCAGGA
GATGCACCTCACAGCTGCAAGCTGTAATAGTCTTGAATTCAGAGACCTCT
ACTCAGATAAAGCTGGGGCTCTGACTACTTGGCTGAGAACCCCAGTGGGC
TGCCTCCCGAAGGCTTCCCCAGGTGGTCCCTGTTGGAAATTTTGAGAGTC
CATTCGGTGTTTTTTGAGCCATCCCTCCCCTCAGNGGTTATGGATTCCTG
TAACCTTGCGCCGCCTGGGCTCATTAAACGGATCGCTCGTCAGACTTAAT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f02.b1 MSMg01no464_f02.b1 CHROMAT_FILE:
MSMg01no464_f02.b1 PHD_FILE: MSMg01no464_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:02 2005
         (381 letters)



>mm_chr11_64617626_64618406
          Length = 781

 Score =  644 bits (333), Expect = 0.0
 Identities = 351/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 25  ccaatcttattttaatcctccattgaaacaaagcgacatctaaggtcatgcaagcatgtc 84
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ccaatcttattttaatcctccattgaaacaaagcgacatctaaggtcatgcaagcatgtc 284

                                                                       
Query: 85  aaactaagccctgtgaatgagtataccccaagactatagcagaagatgaaagaatggatg 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aaactaagccctgtgaatgagtataccccaagactatagcagaagatgaaagaatggatg 344

                                                                       
Query: 145 atttatgacaatcaccaagtcatctcctagaactcactgactcgtgggagcagattcaac 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 atttatgacaatcaccaagtcatctcctagaactcactgactcgtgggagcagattcaac 404

                                                                       
Query: 205 atttcttctggttctacatttagcgacaacccgttggctgtttgaaaatggccagaacag 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atttcttctggttctacatttagcgacaacccgttggctgtttgaaaatggccagaacag 464

                                                                       
Query: 265 gagttttgccagaatgattaagagaaaagcacagcacatctgcgctttcttggtgagtat 324
           |||||||||||||||||  ||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 465 gagttttgccagaatgaagaagagaaaagcacagcacatcagcgctttcttggtgagcat 524

                                                                    
Query: 325 gctggcttgccagcacaccactgtgtgtgtggtggaggtgggcagtggtggagggag 381
           ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 525 gctggcttgccagcacaccactgtgtgtgtggtggaaatgggcagtggtggagggag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)