BAC Information

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BAC

Clone NameMSMg01-464H11
Chromosome11 (Build37)
Map Location 47,478,895 - 47,479,085
singlet/doubletsinglet
Overlap genenone
Upstream geneTimd2, LOC620678, Havcr1, Timd4, Sgcd, LOC628753
Downstream geneLOC100039647, LOC192895, Hn1l-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464H11.T7 (MSMg01no464_h11.b1)MSMg01-464H11.TJ (MSMg01no464_h11.g1)
ACCAG548875AG548876
length751753
length of high quality
(start - end)
318 (100 - 417)192 (122 - 313)
definitionCHROMAT_FILE: MSMg01no464_h11.b1 PHD_FILE: MSMg01no464_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:15 2005CHROMAT_FILE: MSMg01no464_h11.g1 PHD_FILE: MSMg01no464_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTCTTAATTTGCGGCGCTAAACGAGNCACATTTCGTTACCGTCCGCGG
AANNCNNNGTTACCTACTACCACCCCAGNNNNGAANGGGGGNATTTGANT
TTCTGAAGTCCACCTTCTTGACCTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCT
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCTCCTTTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGCTTCAGCGTCTCTGGTTTTATGTGAAGTTCCTTGA
TCCACTTAGATTTCACCCTACTACAAGGAGATAAGTATGGATCAATTTGC
ATTCTTCTACACGATAACAACCAGTTGCGCCAGCACCAATTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGTTTTTAGCTCCCTTGTCTAAGATCAAGT
GACCATATGTGTGTGTTTTTCTTTTCTGCGCCGTATTTCCCATTTCCATT
GGTTTACCTGCCCGCTTTTATACTGTCACCATGATTCTTTTATTTTTTTT
TTTTCTGCCCTAAACCTTTAATTTCTGGTCCCGTTGTTCTTCGTCTCACG
TTTATATCTTCCTTTGTATATCCACGCCCTTTTTTCTCTCCCGTTCCTGC
G
NCCGATGACTAGGGTAGGCTGGNGGCCGCCTGTTTTCAAAATTTAGGTGA
ACTATAGAAGTATCTGCGCACATCAAAGAGTGAGACATTCTCAAGTGAAT
GGGGAAAATGACGGGTACTAACTTCTCAGGAAGCAACTGACTTGGAAGAT
ATCTGATGCAGCAGAAAAAGATCCTTTCCACTCCACTTGACTGGCTTACT
GAGCTCAGCCACTTCCTCTCCATACTGATTCTAATGGGTTTCCCATTGAT
CCAGCTCCCCCGCCTGCCTTTGGACAGCCTTGGCCAAGTCTGTCTCACTG
AAGGCCTTCTAATAAATTATTATCTCAGTGAAGGAAATCAATTGCATGGG
AACGAATATCAGGGAGCTTCAAGCCTCACGTTAAGGGGACCTCTGTTGTT
AAGCTCAGAGGGCATTGTAAGCATGGATAGACTCTCTAGCTCACCGAGTC
TTTCCACTGTGCAGTTATATGTGCATCATTAGATAGTGTTGAAAGACACA
GGATGACAAAATTGTTCCTAAAACTCATGGACTCTGTGGGCAGATGGCCC
TCTATTTCAATTCCCATTTCCCCCCTGCTTAGCACATTGCATAGCTGCTC
TCACAATGCCACACTCATCTTCATAACCCAAGTAAGAAGGTTTTGTATTT
TCCAATGCCCTGTTGGGGAAAAGATTAATTTTCAATAATGAGGCCTTTCT
TTAACCTCTGCCTGAAAACGGCATATATCCATCCCTTTGGTTCATTACTG
CCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_h11.g1 MSMg01no464_h11.g1 CHROMAT_FILE:
MSMg01no464_h11.g1 PHD_FILE: MSMg01no464_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:15 2005
         (192 letters)



>mm_chr11_47478695_47479286
          Length = 592

 Score =  362 bits (187), Expect = e-104
 Identities = 190/191 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctcaggaagcaactgacttggaagatatctgatgcagcagaaaaagatcctttccac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 391 cttctcaggaagcaactgacttggaagatatctgatgcaacagaaaaagatcctttccac 332

                                                                       
Query: 61  tccacttgactggcttactgagctcagccacttcctctccatactgattctaatgggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tccacttgactggcttactgagctcagccacttcctctccatactgattctaatgggttt 272

                                                                       
Query: 121 cccattgatccagctcccccgcctgcctttggacagccttggccaagtctgtctcactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cccattgatccagctcccccgcctgcctttggacagccttggccaagtctgtctcactga 212

                      
Query: 181 aggccttctaa 191
           |||||||||||
Sbjct: 211 aggccttctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)