BAC Information

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BAC

Clone NameMSMg01-464I09
Chromosome11 (Build37)
Map Location 111,102,847 - 111,102,957
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca6, Abca5, Map2k6, LOC100041523, Kcnj16, Kcnj2
Downstream geneLOC667003, LOC100041539, LOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464I09.T7 (MSMg01no464_i09.b1)MSMg01-464I09.TJ (MSMg01no464_i09.g1)
ACCAG548919AG548920
length770746
length of high quality
(start - end)
36 (89 - 124)110 (132 - 241)
definitionCHROMAT_FILE: MSMg01no464_i09.b1 PHD_FILE: MSMg01no464_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005CHROMAT_FILE: MSMg01no464_i09.g1 PHD_FILE: MSMg01no464_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTTTAAAAGCTTGCGGCCGGGGAAAGACCCACTTTCTCAAAGAGGAGC
CGCGGAANNCATGGTAACTACAAAGGGGATCTGTCTGCAGCATAATTATT
TCTCCCCCTCTTCTCCTCTCCCATCACCTGTCCTCCCTCTCCCTCCTCTT
TCCTCTCCCCCTCCCTCTTCCTTCGTCCCATTATTAGGACCTTCCTTCAT
CACTTTCGCCTTCACACTTCCTCATTTTCTTACCTTTGAGTTACAAGGCG
GACTTATATGAGCCGAAAAGATAAGCGAGATTCCTCTAATTGGGACGGGC
ATGATTTGTGCAGAACTAGTATCTTTTTCATGCACCCTCTATATATGTCG
GGATGAATACAGTTCGTTGAGCCATTTTCAGATATCGGTTAGTCCCAATG
AAAAGCATAGACAACATACGGGCCCCTTTGCAAGCCGAAGTACGTACGAA
CGGACCCATATAGTTTGCAATGGTAGAGTCGTTTGTCTGAAGGATGGCAT
TCAACTGGGGTACCAGAGCCGCATAATACAACCGAACGCGCAGAGTTGTA
CGGCGCGAAGAATTTGAGGAATCGCGTCCTAAATATTCGCGAGCGGATTC
TTAACGCCGCGACCCCGGCTTATACATTGCCAATTTGCCCTTGGATTGAT
ATAGGGAACAAACCCTAGTCTCCTTGGTATTTCGGGGGGACGGGGGGTAC
GTAGTACATCGCAAATGCTGGGTCGTTTTGTAATACGGGTGTCGCCCGGT
TTGCGATCACGGCCCGACTN
CATACGATGAAAGTGGGAGGNCGGGGGGCCGCCTGTTCAACACATTTAGG
NGAACNATAGATTTTCTAAAACAATTCTTGNNCCGCAGNTGATGGTGATG
TTTGGTGAGGTTAGTTTGACCACTATAAGGTACAGCCTTATTGGAGGAGA
CATTACTAAAGATGGCCTCTCAGGGCTTATACCATACCATTTTGAATTCA
CTTTCTGCTTTCTTTATACAAATGGAGATATAATCTCTTGGCTTCCTACT
CTTGCCACCTGCTGTCTTGCTTACCCACTTAATGGACTCCCCTTCGGGAA
AGATCCATCTAAATTTTTTTCTTTTTCTATATGCTGTTTTTGATCTCATT
ATTTATCACTTTATTCCACTAGTACTTGTGACGATAACTCTTTTATAGGA
TTGCTTTCACAGTTTATTCACAATGTACCACAAACTCCATATTTACCTTT
CACGATTCATCTCACTCGTGCTACACACTATAGTATACTTCTTATGTACA
TGTTGTTCTCTACATTTTGTATTCCGTCCCGACTACGTATCTCTTAATAT
GCCCACTACCTTTTTCCTTCCCCTGATTCTATGAAACGTTTCTCCACCCT
TAATATTTTCTCGCACGTTCCCCAATTTCAGTAATGTGACCCCCTTCTTT
ACTTTTTTTTTCCTCGCGTTATCCCTCCCCTTTCCTTCACCCCCTTTAGC
CCTTTCTTTTTATCGCCACCTCTACTCCTTTATTATTAATCACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_i09.g1 MSMg01no464_i09.g1 CHROMAT_FILE:
MSMg01no464_i09.g1 PHD_FILE: MSMg01no464_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:19 2005
         (110 letters)



>mm_chr11_111102647_111103157
          Length = 511

 Score =  184 bits (95), Expect = 2e-51
 Identities = 107/111 (96%), Gaps = 1/111 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccttattggaggag-acattactaaagatggcctctcagggcttataccataccat 59
           |||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct: 311 acagccttatcggaggagtacattactgaagatgacctctcagggcttataccataccat 252

                                                              
Query: 60  tttgaattcactttctgctttctttatacaaatggagatataatctcttgg 110
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tttgaattcactttctgctttctttatacaaatggagatataatctcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 511
Length adjustment: 8
Effective length of query: 102
Effective length of database: 503
Effective search space:    51306
Effective search space used:    51306
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)