BAC Information

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BAC

Clone NameMSMg01-464L18
Chromosome11 (Build37)
Map Location 74,279,147 - 74,279,525
singlet/doubletsinglet
Overlap geneGarnl4
Upstream geneOlfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412
Downstream geneE130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464L18.T7 (MSMg01no464_l18.b1)MSMg01-464L18.TJ (MSMg01no464_l18.g1)
ACCAG549079AG549080
length789790
length of high quality
(start - end)
46 (134 - 179)382 (71 - 452)
definitionCHROMAT_FILE: MSMg01no464_l18.b1 PHD_FILE: MSMg01no464_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:36 2005CHROMAT_FILE: MSMg01no464_l18.g1 PHD_FILE: MSMg01no464_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAGTTGCGGCCGCTANACGAANCACTATTTGCTTATGAAGGCGNGGNA
ANTCCTAATATTCTCATAAAATTTATGAAGCGTCNTTTATAGAGAAACTG
CTATTGGTCCATTCTGATAGTCACTACTACAATGATAACTCTGCCAGTCT
TTGGTGTCATGAGTTAGTTGCTTCTGAGATAGTAAGCAGGAATTATACTA
CTCATAGTACATGCCAAAAAGTTGTAAAACCATTACCCAAAGGCCATACT
TTGGAACTAACAATTTATTACCGGTGCTAGGACAGAAGATAAAATGTTGA
CCAGGTTCATCCGTTTTTTTTTTTTCTATTAACTTATTTATAGTTCTTAA
TTCTCCATTATCTGTGGAGAACATTATCAACAGGCGACGAATGTTTATCT
TGATAGTTACTCTTACCCGACATGCCCGCATACATTCTCTGCTGTCTACT
TCCTACTCTATTTACTCTTTGAACTTTTGTGTGAACTCTGCGATGAATTT
TTCCCATGTGATCATGTTCTTTGCCCGCCATCCGTTCTCATTTCCCCTTA
TAGTACCGCCATTTCCCTTGATCCCTTCCTCTTACCTTTTCTCCTTCCCC
AACTTTCTTCTTTATTTCTCCTTACCTTTCTTTATCCCCCTTTTATCATA
AATTTTCTTTTTTCCCTTTTTTTCCCCCCACTCTTTTTTTCCGCTTTCCT
TTTTCACACTCCTCTTCCAATTAGCCCCCTTTTTTCATTGCCCCCACTCC
TCTCTTACCTCCTTTCTTTCCCCACTCTTTTTATTTCTT
TGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCGCGAAATTCCACCGAGGTGGCCAGGCCTGAGACTCCACCC
ACCCTAAAAGGAAGTGTGTCTCCCAAGTGCCAAGCCCCAGTGCCTGCTCT
GCCCGCTGAAGACAGAGGGCTCCCTTGGCACCCAGGTGCTCTGCTTTCTA
GAGGTGTTTGACTTGCGCTGCCTGCCAGCTCCAGGAGATGGCGCTCTGTA
GATTTCACCGTGTGCCCTGCTGAGCTCACCTGTATCCCTCCCTGCCCTAG
CAACCACATCCCCTTCTTTAGGCCTTTGAGAACAAAGTCAAGGTGTTCAC
ATTCCTGGTGGCCCTGTCGGACTAGTTACTCTCAGGTCATCACTTGTCAA
AGGACTCCTTGATTTAATGAAAATGGCTCATGATGGTGGTACTCACCTGT
CATGTCTGTACTCGCCAGACTGAGTCCGTAGGATTGCAAGTTCAAGGCCA
CTCTGTTCTCCACAACGATTCTGCTTATTTACAATCATCACCCCATTTTA
CCGAACTTACTATATTTTTGAAGTTGGCTCTGTGCCCTGCGTCCATGGCC
CCCTGCTCCTCCTGTCATTTTACACTCCCTTGGTAACCCACGCTTTTCTT
GTCCCACAGCTTGTTTCTCCCCGTCTTGCCCCTGCCCTGCTTTTCCCCCT
TCCTCCTTTCCTTTCGTCTTTCTTTTCTCCTTTCGTCCCACCTTTTTTCA
CTCTTTTTTCGCCCTTTTATACTCTTCTTTTTCTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_l18.g1 MSMg01no464_l18.g1 CHROMAT_FILE:
MSMg01no464_l18.g1 PHD_FILE: MSMg01no464_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:36 2005
         (382 letters)



>mm_chr11_74278947_74279727
          Length = 781

 Score =  652 bits (337), Expect = 0.0
 Identities = 370/381 (97%), Gaps = 3/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgaggtggccaggcctgagactccacccaccctaaaaggaagtgtgtctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 accgaggtggccaggcctgagactccacccaccctaaaaggaagtgtgtctcccaagtgc 520

                                                                       
Query: 61  caagccccagtgcctgctctgcccgctgaagacagagggctcccttggcacccaggtgct 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 caag-cccagtgcctgctctgcccgctgaagacagagggctcccttggcacccaggtgct 461

                                                                       
Query: 121 ctgctttctagaggtgtttgacttgcgctgcctgccagctccaggagatggcgctctgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ctgctttctagaggtgtttgacttgcgctgcctgccagctccaggagatggcgctctgta 401

                                                                       
Query: 181 gatttcaccgtgtgccctgctgagctcacctgtatccctccctgccctagcaaccacatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gatttcaccgtgtgccctgctgagctcacctgtatccctccctgccctagcaaccacatc 341

                                                                       
Query: 241 cccttctttaggcctttgagaacaaagtcaaggtgttcacattcctggtggccctgtcgg 300
           |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 340 cccacctttaggcctttgagaacaaagtcaaggtgttcacattcctggtggtcctgtcgg 281

                                                                       
Query: 301 actagttactctcagg-tcatcacttgtcaaaggactccttgatttaatgaaaatggctc 359
           ||||||||||| |||| | | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 280 actagttactcacagggt-accacttgtcaaaggactctttgatttaatgaaaatggctc 222

                                
Query: 360 atgatggtggtactcacctgt 380
           | |||||||||| ||||||||
Sbjct: 221 aggatggtggtattcacctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 781
Length adjustment: 9
Effective length of query: 373
Effective length of database: 772
Effective search space:   287956
Effective search space used:   287956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)