BAC Information

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BAC

Clone NameMSMg01-464N01
Chromosome11 (Build37)
Map Location 19,184,061 - 19,184,494
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627716, LOC665796, Meis1
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2, Actr2, Rab1, Cep68
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464N01.T7 (MSMg01no464_n01.b1)MSMg01-464N01.TJ (MSMg01no464_n01.g1)
ACCAG549141AG549142
length755763
length of high quality
(start - end)
467 (49 - 515)288 (80 - 367)
definitionCHROMAT_FILE: MSMg01no464_n01.b1 PHD_FILE: MSMg01no464_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:42 2005CHROMAT_FILE: MSMg01no464_n01.g1 PHD_FILE: MSMg01no464_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGCATAAGTACCGCATTGATTGAACCAAAATTTCCTTATGGG
CCAGTGCCACATATATTAGGGCATTTATAGGGTGAGGTGCCCCAAATGCC
TGTCTTCATTTGCACTTCTCTCTTCCTCATTATTTCTGTGATGGAGAAAA
TGCGTTCCCATGTGAGCACACACACACACACACACACACACACACACACA
CACACACACACACACACATTAATGAAACTGCTTCCAGACACATGAATCCA
GGAATTTTATGCCTTTGTTATTATCCTTTTGATAACATTTTCTAATTAAG
TTAGTGTGACATGCAGCCAAAAAACCAGAATTACTTCAGAATATCCTCAT
ATGTTCCTTTTTGTGGTGCAGCTTATCCTGAAAGCAAGACAAAGAACTCA
GTTTCAGCTGCTATCAGAAGGGTTTAGGTTAGGCTGAAAAGACTCTTACA
AGTTGTCTGAACTGCCTTGTGGGAAATTTACAAACCTCGGTCTCTAGAGT
ATGCTAAGAGGTGGGAAGTAAAAGAACACTTCCTACGTGTGATTACCTCA
GTTTAAATAACATCCACCTAAAACTTTCTCTGTGTGCCAAATGTTAATGA
ACTTCTGCCCTCATATCACCTTCGTTCTCATGCCACGGTCTCACGGAATT
AGAGCAATTTTCTTTGAAATAAGTTGGCCCCAATTATCCCTAACCCGATC
CCCCC
NTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTATCAT
CATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAG
GGTGTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAG
TGGTCCTGGTTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTG
GCAATCTCTGGAGTTATTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCC
TCTGTTGATTTTGTTACCCTCAATCAGCAGGCGTGGGAGACAAGCTCTCT
CTTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCTT
TCGGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAG
GTGAAGGCCCTTAACAGGATCTTTCCCAGAATCTCTGTGGCTCTTGCCAG
GAAGGTGGCCGGTTGTCTGGTGTCGAATATGGCGTCGCTCCAGAAGTTCT
GTCGACCTTGTCTTTATCATAAACTGTCGGCTTCTGTTCTTTCACTGCTT
TCCTGTTTCTTCTGCCCTTCGCCCTGTCTTTTTTTCTACATTCTTTCCTT
CCGCGTCCGGTTATCGCCACTTTTTATTTTCTTTTTTTTCCCCTCCCGTT
CTTCTCTTTATCGTTGTTTCCCCTTTTCCTCCCCCTTTTTTCGTTCTTCC
CGCCTTATTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_n01.b1 MSMg01no464_n01.b1 CHROMAT_FILE:
MSMg01no464_n01.b1 PHD_FILE: MSMg01no464_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:42 2005
         (467 letters)



>mm_chr11_19183641_19184507
          Length = 867

 Score =  708 bits (366), Expect = 0.0
 Identities = 425/464 (91%), Gaps = 30/464 (6%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcataagtaccgcattgattgaaccaaaatttccttatgggccagtgccaca 63
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 ggaattctgcataaggaaagcattgattgaaccaaaatttccttatgggccagtgccaca 795

                                                                       
Query: 64  tatattagggcatttatagggtgaggtgccccaaatgcctgtcttcatttgcacttctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tatattagggcatttatagggtgaggtgccccaaatgcctgtcttcatttgcacttctct 735

                                                                       
Query: 124 cttcctcattatttctgtgatggagaaaatgcgttcccatgtgagcacacacacacacac 183
           |||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 734 cttcctcattatttctgtgatggagaaaatgcgttcccatgtgag--------------- 690

                                                                       
Query: 184 acacacacacacacacacacacacacacacacacacattaatgaaactgcttccagacac 243
                          |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 689 ---------------cacacacacacacacacacacattaatgaaactgtttccagacac 645

                                                                       
Query: 244 atgaatccaggaattttatgcctttgttattatccttttgataacattttctaattaagt 303
           ||||||||| |||||||||||||||||||||| || ||||||||| ||||||||||||| 
Sbjct: 644 atgaatccaagaattttatgcctttgttattagccctttgataacgttttctaattaagc 585

                                                                       
Query: 304 tagtgtgacatgcagccaaaaaaccagaattacttcagaatatcctcatatgttcctttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tagtgtgacatgcagccaaaaaaccagaattacttcagaatatcctcatatgttcctttt 525

                                                                       
Query: 364 tgtggtgcagcttatcctgaaagcaagacaaagaactcagtttcagctgctatcagaagg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgtggtgcagcttatcctgaaagcaagacaaagaactcagtttcagctgctatcagaagg 465

                                                       
Query: 424 gtttaggttaggctgaaaagactcttacaagttgtctgaactgc 467
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtttaggttaggctgaaaagactcttacaagttgtctgaactgc 421


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)