BAC Information

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BAC

Clone NameMSMg01-465C09
Chromosome11 (Build37)
Map Location 40,183,846 - 40,184,411
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465C09.T7 (MSMg01no465_c09.b1)MSMg01-465C09.TJ (MSMg01no465_c09.g1)
ACCAG549397AG549398
length7521,679
length of high quality
(start - end)
567 (68 - 634)---
definitionCHROMAT_FILE: MSMg01no465_c09.b1 PHD_FILE: MSMg01no465_c09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:08 2005CHROMAT_FILE: MSMg01no465_c09.g1 PHD_FILE: MSMg01no465_c09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXATTTCAAAGAGGAGCCGCGGAATTC
TACCTTACTTCATTGGTCATTCTGTCAATTAAATACTGAGTGCACTGTAT
CTGAATTCTGTTTTCCCCAATAATTTTATTATCACCAATAACTTTATTAT
ATCTGAGATATGACATTAGAAACTTTCTCATTCTCTTACAAATTTAGTAT
GTATTTTGAATTTGACTTGATCATGAAAAATATAACTGTCCTTGAAAAGA
ACACATGTTCACTCACATGGAATGGCTCAAAATCTGTTGAAACTCCAGCA
CCAGGAATTCTAATACCCTTTGATGGCCTCCACAGTATTGCATCAACAGA
AACATGAATATTCACATAATTAAAAATAGATATTTTTCAAAAATGGCTGT
TCTGGGTTTTTTGAAGCAGAACGTTTTTAGATATTAAGAAAAATGTATAT
CCTCAAATAGCCTCAATTTCTTTTGAAATAGTGAAGTAATAGCTATAGAT
ATAATACTTGTAAATGTAGTCCAGTATTTCTAGCATTATCCTTAGGTCAT
TCATGACTAGAAGAGCAACTGANAACTGAAATGAAAAAATGGTTAAGCTC
TAACCTATAGTTAATAGACAAATTCCAAAATGTAACACTCTTGCCTTGAT
ATATCTCATGTTACCATCATGATGCCACTGGAACCATACCATTATTCCCA
AGTTTCCTGTGTTTAAGTAAAAACCTTTCCAAAAAAAAGCCCCAGAATAT
AN
TTTTGTCAGTCGTGCTCTGCCGGCGCACGAGCCCANGACCCCGGNCGTAT
CTCTCATCTACATCAATNGCGCGATATGATTTGAGCCCTCTCAACTATTC
TACGTGCTTTCTACTCTATCGTGCTGACAGCGCGTCATTCNTCCTGCTCG
TAGCACTCACTCCGCGAAGATCGTAACAGCTGTCAGTTACGCGCAGAGAT
GNCGTGTTGCTTNACTGTGCGTGCTTGTTGTCGATTCTATATCGACTGCG
TCCGCGCNCGCGTNAGCATNCNATGGCGCTGCGTACGATACGTATAGGGC
GCTCGACGAGNAGAGACGAATAGAGTAGAACACGAGTAGCTNGATACGCA
GATACNCACGTCGAACGCGCACGCAGCACGTTGTGTGCACGATCACACCA
TACTGTTACATAGATACACGCGTCTCTCNCGACACGCCGTCTTACGAACG
CGACTTGATGTCANCTCACTTACCGTNCTCNTGTTACTACTCGCTTCGTC
TACTCTCTTCTCGATACTATACCATACGCTAATCACTTATATACGTTAGT
ATTAGCGCGACGCGGCCCGTATCATCACACGATCACAACGTAGATGATTG
ATAAGTGATCACGCAGTTATAGTATACAGATATACATTATCATCGTATAC
TCGCATATAGAGACATATGACACCGCGCCGCTCATCATCATTGTGTTANC
ACCAACAGCATATATTGTGTCGTCCATCGTTTGTCGTGTAGTAGAGCGTC
GCCGTAACGAATACCCATACGGAGTAACTCGATGTGTGCGCCGCGCGATG
ATGTAGCGATGGCAGCGTACCGCTTACGCGCGAGCGTCGACATTGCACTG
CGGTGATGTTAGTATTGATTGTTGTGTTNCACATATCTATACTGAATGAC
GGTTGTGTGTATCACATCTACACAAATATGTATTACTCGGTATAGCTAGA
CGTAACTGGTTTAGCACGATGATNTCGCGCACATGAGCGACGCTAGGACG
NGTATGAGCGACGCGTGCAGTGTGTAGATGCATGATGCATGTATAGCGAT
GTATATACGTCGGCGNCGTCTCTGATCGTATCGCTACACGACATATAGCG
TCATAGCTNGTCGGACACTNGNTCGTGCTATCGACNCATATCTTCATATA
TGTGTACGCGCGACATCTGCGAGTATCAGGAGAGGCACGTACATAGTGTG
TGTCGTCGAGACCGATACAAGGAGAGATGCGCGAGCAGTACTACGATATA
GCGATCGTATCGCGCGCGCGTGTGTCGAGCGTACGTATGTGANCGGAGTA
AGTCGGCTNACCGTATTCTCGTGAGTCAATGTCGCGGATCGACTCATGAT
ATACGTGTAGCACTAATTCTATAATACACGTGAGACGGCACAGTCGAGCA
TTCCATATCGCGAGTGCTGAGACCGACGACGCGCGCGTCNCGCTAATNTG
AGTATATGTGTCTGTGTTGTTGCTTGTGATTATGTGAATGTGTNGCTATA
CGNACGCGCGACTGGGGCACNATGCACGATAGACTATCTANCGCGCACCT
GCTGTCATGCCTGTCGACACGTAGATCGTGATGCGGTCAATATAGAATCT
ACGGTGCGTTGCACGCGCAGCTGACTGACTCGCCAACCACAGAATGTGGA
CTATGTATAACACGANAGACGTGTGAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_c09.b1 MSMg01no465_c09.b1 CHROMAT_FILE:
MSMg01no465_c09.b1 PHD_FILE: MSMg01no465_c09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:08 2005
         (567 letters)



>mm_chr11_40183646_40184612
          Length = 967

 Score = 1052 bits (544), Expect = 0.0
 Identities = 561/567 (98%), Gaps = 1/567 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattctgtcaattaaatactgagtgcactgtatctgaattctgttttccccaataatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattctgtcaattaaatactgagtgcactgtatctgaattctgttttccccaataatttt 260

                                                                       
Query: 61  attatcaccaataactttattatatctgagatatgacattagaaactttctcattctctt 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 attatcaccaataactttattatatctgagatatgactttagaaactttctcattctctt 320

                                                                       
Query: 121 acaaatttagtatgtattttgaatttgacttgatcatgaaaaatataactgtccttgaaa 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaatttagtatgtattttgaatttgacttgatcatgaaaaatataactgtccttgaaa 380

                                                                       
Query: 181 agaacacatgttcactcacatggaatggctcaaaatctgttgaaactccagcaccaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaacacatgttcactcacatggaatggctcaaaatctgttgaaactccagcaccaggaa 440

                                                                       
Query: 241 ttctaataccctttgatggcctccacagtattgcatcaacagaaacatgaatattcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctaataccctttgatggcctccacagtattgcatcaacagaaacatgaatattcacat 500

                                                                       
Query: 301 aattaaaaatagatatttttcaaaaatggctgttctgggttttttgaagcagaacgtttt 360
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaaaaatagatatttttcaaaa-tggctgttctgggttttttgaagcagaacgtttt 559

                                                                       
Query: 361 tagatattaagaaaaatgtatatcctcaaatagcctcaatttcttttgaaatagtgaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagatattaagaaaaatgtatatcctcaaatagcctcaatttcttttgaaatagtgaagt 619

                                                                       
Query: 421 aatagctatagatataatacttgtaaatgtagtccagtatttctagcattatccttaggt 480
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 aatagctatagatatagtacttgtaaatatagtccagtatttctagcattatccttaggt 679

                                                                       
Query: 481 cattcatgactagaagagcaactganaactgaaatgaaaaaatggttaagctctaaccta 540
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 680 cattcatgactagaagagcaactgaaaactgaaatgaaaaaatggttaagctctaaccta 739

                                      
Query: 541 tagttaatagacaaattccaaaatgta 567
           |||||||||||||||||||||||||||
Sbjct: 740 tagttaatagacaaattccaaaatgta 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)