Query= MSMg01no465_f06.b1 MSMg01no465_f06.b1 CHROMAT_FILE:
MSMg01no465_f06.b1 PHD_FILE: MSMg01no465_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:23 2005
(497 letters)
>mm_chr11_54856993_54857887
Length = 895
Score = 710 bits (367), Expect = 0.0
Identities = 418/439 (95%), Gaps = 12/439 (2%)
Strand = Plus / Minus
Query: 4 ggaattctcaatttcccagaaagagaccagacctctactcagtaaacacaaagggcaatc 63
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaattctc-acctcccagaaagagaccagacctctactcagtaaacacaaagggcaatc 376
Query: 64 catcgaggcatggtggggcccacctgcacttgggaggcaggagtaggaacatcaggattc 123
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 375 catcgaggcatggtggggcccacctgcacttgggaggcaggagtaggaacgtcaggattc 316
Query: 124 attgcttatattcagtctcctcattactgagagctacttagtgctgggtggctggtgcca 183
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 315 attgcttatattcagtctcctcattaccgagagctacttagtgctgggtggctggtgcca 256
Query: 184 ctgtattctcagaaaaaaaaaagtcagttaacaaatgctctagggtcactcagtgtctta 243
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctgtgttctcag-aaaaaaaaagtcagttaacaaatgctctagggtcactcagtgtctta 197
Query: 244 gtaactgttctgttgctgtgaagagacactgtacccaaggcagcaatttttcccccaaga 303
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 196 gtaactgttctgttgctgtgaagagacacagtacccaagacagcaatttttcccccaaga 137
Query: 304 cagggtttctctgtatagccttggga-ctccaacacaaagatccacctacctttgtctcc 362
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct: 136 cagggtttctctgtatagcctt-ggacctccaacacaaagatccacctgcctttgtctcc 78
Query: 363 tgattgctgagattaaaggcatgaacctccactgccaggccagaggcaac------atat 416
|||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 77 tgattgctgagattaaaggcatgaacctccactgccaggccagaggcaactcttttattt 18
Query: 417 atatacttaatttggagct 435
||||| ||||||||||||
Sbjct: 17 atata--taatttggagct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 895
Length adjustment: 10
Effective length of query: 487
Effective length of database: 885
Effective search space: 430995
Effective search space used: 430995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no465_f06.g1 MSMg01no465_f06.g1 CHROMAT_FILE:
MSMg01no465_f06.g1 PHD_FILE: MSMg01no465_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:23 2005
(389 letters)
>mm_chr11_54661902_54662690
Length = 789
Score = 700 bits (362), Expect = 0.0
Identities = 380/389 (97%), Gaps = 6/389 (1%)
Strand = Plus / Plus
Query: 1 cttgaataacagctgttctgagcaataattccacatcagaacctagtttcatcatctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttgaataacagctgttctgagcaataattccacatcagaacctagtttcatcatctgtt 266
Query: 61 aagaaaatcaaacagaaaacaaaacaaaacaaaaagcaaaaaacaacaacaacaacaaaa 120
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 267 aagaaaatcaaacaga----aaaacaaaacaaaa--caaaaaacaacaacaacaacaaaa 320
Query: 121 acaatcagacagagtaacccttaaggttaagagtgcttccgtaaggctgcactggtcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatcagacagagtaacccttaaggttaagagtgcttccgtaaggctgcactggtcttg 380
Query: 181 aaaaccacagttctacaggtccctttctggtaaggcagcttttcgctgtgcagctgtatc 240
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 aaaaccacagttctacaggtccctttctcgtaaggcagcttttcgctgtgcagctgtatc 440
Query: 241 aagcattgtagaaagcccagcagttcagacgctcttcatttttattagtcatcccatgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcattgtagaaagcccagcagttcagacgctcttcatttttattagtcatcccatgtt 500
Query: 301 ttgttcaaaaacaggtttaggacttttctgttatatgtttttaaatgtgtggnggtatac 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 501 ttgttcaaaaacaggtttaggacttttctgttatatgtttttaaatgtgtggtggcatac 560
Query: 361 acctttggtcccagcactctggaggcaga 389
|||||||||||||||||||||||||||||
Sbjct: 561 acctttggtcccagcactctggaggcaga 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
