BAC Information

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BAC

Clone NameMSMg01-465H15
Chromosome11 (Build37)
Map Location 8,156,875 - 8,157,345
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665380, Tns3, LOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469, Abca13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465H15.T7 (MSMg01no465_h15.b1)MSMg01-465H15.TJ (MSMg01no465_h15.g1)
ACCAG549647AG549648
length763779
length of high quality
(start - end)
491 (62 - 552)471 (63 - 533)
definitionCHROMAT_FILE: MSMg01no465_h15.b1 PHD_FILE: MSMg01no465_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:35 2005CHROMAT_FILE: MSMg01no465_h15.g1 PHD_FILE: MSMg01no465_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAATTCTCCAAAT
ACACATATGGTCTTGGCCTTTTTTCCGTTGGGAGACTATTAATGACTGCT
TCTATTTCTTTTAGGGGTTATGCGACTGTTTAGATGGTTTATCTGATCCT
GATTTAACTTTGGTATTTGGTATCTGTCTAGAAAATTGTCCATTTCATCC
ACATTTTCCAGTTGTGTTGAGTATAGGCTTTTGTAGTAGGATCTGATGAT
TTTTGGAATTTCCACGGTTTCTGTTATTATGTCTCCCTTTTTATTTCTGA
TTTTATTTTTTTGGATACTGTTTCTGTGCCTTCTGGTTTGTCTGGCTAAG
GGTTTATCTGTCTTGTTGATTTTCTCAAAGAACCTGCTCCTGGTTTGGTT
GATTCTTTGTATAGTTCTTTTTGTTTCTATTTGATTGACTTCAGCCCTGG
ATGCCCTGAGTTTGATTATTTCTGATTATTATCTACTCCTCTTGGATGTA
TTTGCTTCTTTTTGTTCTAGAGCTTTCAGGTGTGCTGTCAAGCTGCTAGT
GTAAGTTCTCTCCAGTTTCTTTTTGGAGGCACTTAGAGCTATTAGTTTTC
CTCTACCACTGTTTTCATTGTGTCCCATAAGTTTTGGAATGATGTGTCTT
CATTTCCCTTAAATTCCAAAACGCCCCTAATTTTTTTAACTTCCTCCCTG
TAAAACTCATTACCGGATTAAAATTTTGTTCACCCTTCCTCCGTTTTTGG
CTTTTTCCCCCCC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCTCATCGCTTTGCTTGTGGATATGGTATGACTAG
CTTCTGGTTTCTTGCTTTGACCCATTAAAAACTTCAGACTGTGATAGAGA
ATCATAAAGCAAATGAGCCCTGCTCTCCCTGAAGTTTGGTCAGGGTGTTT
TGTCACAACAAAAAGAAAAGTAGAACAATAATATTTCAGACTGTTCTAAG
CACTCAATTGTTTGCAAATGTTAAAATGAACTAAAAATGACCTTTTATAT
TTATATAACTCTAAGAAATTATTATGTGTCTCTTATGAAGAGTTGTGTAC
AGTGTTAATTGTGTTAGAAAGCAGTTTTTTATTAAAATAACTAATGATCT
GCCCAACAATTCAAGAATTACAAACTAAGTAATATTATTCTTTCATACGT
AATATTGACAGTCTATGGCAACAAACGTACAAACCTAATAAAGAAATCTA
GTTTCCAAAATTTCTTTACTGTGTTTTTTTCCTGCAAATTCCTTTCTCAG
TTCATGGGAGGGGCTTACCATCCTATTAGGTCTTCAGAAATAGTTTCATC
CTTCTCGGGGAAAATCAGAAGTCTCCATTTTGCCCCAAAGAAAAGGTTTT
TTTGGGAGGAATTCATTGCTTCTCCCGAGGTTTGGAAAAATATTTCCAGG
GGTGTCTAAAAAAAAAAAATTTTTTTATTTTTTTGCGGAAAAAAAAAATC
GGGTCGGGGGGTAATTCTTACTCTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_h15.g1 MSMg01no465_h15.g1 CHROMAT_FILE:
MSMg01no465_h15.g1 PHD_FILE: MSMg01no465_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:35 2005
         (471 letters)



>mm_chr11_8156675_8157545
          Length = 871

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcctcatcgctttgcttgtggatatggtatgactagcttctggtttcttgctttgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcctcatcgctttgcttgtggatatggtatgactagcttctggtttcttgctttgacc 260

                                                                       
Query: 61  cattaaaaacttcagactgtgatagagaatcataaagcaaatgagccctgctctccctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattaaaaacttcagactgtgatagagaatcataaagcaaatgagccctgctctccctga 320

                                                                       
Query: 121 agtttggtcagggtgttttgtcacaacaaaaagaaaagtagaacaataatatttcagact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtttggtcagggtgttttgtcacaacaaaaagaaaagtagaacaataatatttcagact 380

                                                                       
Query: 181 gttctaagcactcaattgtttgcaaatgttaaaatgaactaaaaatgaccttttatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttctaagcactcaattgtttgcaaatgttaaaatgaactaaaaatgaccttttatattt 440

                                                                       
Query: 241 atataactctaagaaattattatgtgtctcttatgaagagttgtgtacagtgttaattgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atataactctaagaaattattatgtgtctcttatgaagagttgtgtacagtgttaattgt 500

                                                                       
Query: 301 gttagaaagcagttttttattaaaataactaatgatctgcccaacaattcaagaattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttagaaagcagttttttattaaaataactaatgatctgcccaacaattcaagaattaca 560

                                                                       
Query: 361 aactaagtaatattattctttcatacgtaatattgacagtctatggcaacaaacgtacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactaagtaatattattctttcatacgtaatattgacagtctatggcaacaaacgtacaa 620

                                                              
Query: 421 acctaataaagaaatctagtttccaaaatttctttactgtgtttttttcct 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acctaataaagaaatctagtttccaaaatttctttactgtgtttttttcct 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)