BAC Information

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BAC

Clone NameMSMg01-465J05
Chromosome11 (Build37)
Map Location 16,715,039 - 16,907,791
singlet/doubletdoublet
Overlap geneEgfr, 2810442I21Rik, A630050E13Rik, Plek
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583
Downstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465J05.T7 (MSMg01no465_j05.b1)MSMg01-465J05.TJ (MSMg01no465_j05.g1)
ACCAG549723AG549724
length746752
length of high quality
(start - end)		474 (41 - 514)465 (70 - 534)
definitionCHROMAT_FILE: MSMg01no465_j05.b1 PHD_FILE: MSMg01no465_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:44 2005CHROMAT_FILE: MSMg01no465_j05.g1 PHD_FILE: MSMg01no465_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,715,039 - 16,715,509)(16,907,391 - 16,907,791)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATCTCTACCGAGTTCACTTGATTGGTTAATTCTGTGCATCCTGTCCTAAC
CCATGCAATGTTCCAACTGTACCTTTCTATTTTAAATAAAAGACTGCAGC
CTTAGTGCTGAGGTGTCAGTAGGAAAATACTTGAGACTATAAGTTTGACC
TACAGACCCTAAAAGCAAAGAAGGGTCTAAACTAAAAGGATATTCTAACA
TTCATTTAGCTAATTTTTCTGTGTCTTGGTCCTCAACCAGTAGCTAAAAC
ACAGATGAGCTAAATGGTCCAGTGATGTCTATAAATACGCTCTCGAAAGC
TGGCATTAGGCATTTCAATATGCTTTTCCCAGAATGAGCGTTCTTGGATT
TTTTTTTTTTTTGCACTGTCTTTTGTTTAATTCTTTTTCCTATGTTTGAA
ATTCTAAAGTCTTTGTATTGGTCTGTATGCTTTTCAAAAATGAAGATTGT
TTTCTACTGGAGTTGTATTGGTCTACTTAATTCCACTGCGTTCTGAGTTA
TTAGCCTGAGCAATATCCTGCCTTGATGGCAAAACCCCATTATTCTCATA
NAAGACCCCAGGTTAGTTCAAATCTTAAGTCAGGTTCTCTTTTTGAAGGT
TGAGGCCCCATTCATGGGAAACCAAAGGGAAAAATTTTCTCCCTCCGGGG
GGGGACATCGGGGGAAAATTTCCCCTGGGTTCCTTGGAAATATAAN

CATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACACATCGGGACTGCTGGCATCCTGTGGGCA
ATACTCTGTGCACAAACACACTTCATGGAGCCAAGTGGGTTCATGAAGCC
GCTCAGAAATGTTGCTTCTGACTAAACTTCCACAAGAAGCTTTCTAACCA
CATGAGCAGCCAGTGTTGCTCTTATCTTTTTAAAACTCAATGCAGTTAAT
TAAATATCTAGTTAATCAAGTTTTGAGAATGGGTCTTACTCTATAGCTCT
TAATGTATTTCTAAGGCTAAACTTAAATTGGTTGCAAGCCTCCTGCCTCA
GTCTCCCAGACCCTACGATTTCAGGAATGAACAATCTGGTCCAGCTGCAT
CTTTATTTTAGCTCATCCATCTGTTTCTTTTTACCTTAAAATGTTCTATG
TCTATGAACATAGGACACTAAATGGTACATATCACAGCCTGGTTCCACTT
TTTATTTCAAATTAGAAAGAAACTTTCATTCATCTGTGTCATGCCCAGAG
GTATGTATGACAGAATCAGGAGAAATACCCTCTCTTATCCCCTGAGCCCT
GAGATCTCTGTTTATCACCCTAAGGGTTTTCCCGAAGGAAAAGCTAATCT
CCCATTACTGCTTTACGGTTTATCTTGCGGTGGGTGAAAAGTTATATAAA
TCTTTACTTTTGGGCAACTCCTACGCCCCCCTTTTTCTTTCCCCCCTACC
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_j05.b1 MSMg01no465_j05.b1 CHROMAT_FILE:
MSMg01no465_j05.b1 PHD_FILE: MSMg01no465_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:44 2005
         (474 letters)



>mm_chr11_16714836_16715709
          Length = 874

 Score =  857 bits (443), Expect = 0.0
 Identities = 464/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatctctaccgagttcacttgattggttaattctgtgcatcctgtcctaaccca 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 204 ggaattcatctctaaagagttcacttgattggttaattctgtgcatcctgtcctaacccg 263

                                                                       
Query: 64  tgcaatgttccaactgtacctttctattttaaataaaagactgcagccttagtgctgagg 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 264 tgcaatgttccaactgtacctttctattttaaataaaagactgcagccttggtgctgagg 323

                                                                       
Query: 124 tgtcagtaggaaaatacttgagactataagtttgacctacagaccctaaaagcaaagaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtcagtaggaaaatacttgagactataagtttgacctacagaccctaaaagcaaagaag 383

                                                                       
Query: 184 ggtctaaactaaaaggatattctaacattcatttagctaatttttctgtgtcttggtcct 243
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 384 ggtctaaactaaaaggatattctaacattcatttagctaatttttctgtgtcttggccct 443

                                                                       
Query: 244 caaccagtagctaaaacacagatgagctaaatggtccagtgatgtctataaatacgctct 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 444 caaccagtagctaaaacacagatgagctaaatggtccagtgatatctataaatacgctct 503

                                                                       
Query: 304 cgaaagctggcattaggcatttcaatatgcttttcccagaatgagcgttcttggattttt 363
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 cgaaagctggcattaggcatttcaatatgcttttcccaggatgagcgttcttggattttt 563

                                                                       
Query: 364 tttttttttgcactgtcttttgtttaattctttttcctatgtttgaaattctaaagtctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttttttttgcactgtcttttgtttaattctttttcctatgtttgaaattctaaagtctt 623

                                                              
Query: 424 tgtattggtctgtatgcttttcaaaaatgaagattgttttctactggagtt 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgtattggtctgtatgcttttcaaaaatgaagattgttttctactggagtt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no465_j05.g1 MSMg01no465_j05.g1 CHROMAT_FILE:
MSMg01no465_j05.g1 PHD_FILE: MSMg01no465_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:44 2005
         (465 letters)



>mm_chr11_16907391_16908255
          Length = 865

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/401 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatcgggactgctggcatcctgtgggcaatactctgtgcacaaacacacttcatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacatcgggactgctggcatcctgtgggcaatactctgtgcacaaacacacttcatgga 342

                                                                       
Query: 61  gccaagtgggttcatgaagccgctcagaaatgttgcttctgactaaacttccacaagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gccaagtgggttcatgaagccgctcagaaatgttgcttctgactaaacttccacaagaag 282

                                                                       
Query: 121 ctttctaaccacatgagcagccagtgttgctcttatctttttaaaactcaatgcagttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctttctaaccacatgagcagccagtgttgctcttatctttttaaaactcaatgcagttaa 222

                                                                       
Query: 181 ttaaatatctagttaatcaagttttgagaatgggtcttactctatagctcttaatgtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttaaatatctagttaatcaagttttgagaatgggtcttactctatagctcttaatgtatt 162

                                                                       
Query: 241 tctaaggctaaacttaaattggttgcaagcctcctgcctcagtctcccagaccctacgat 300
           || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tccaaggctaaccttaaattggttgcaagcctcctgcctcagtctcccagaccctacgat 102

                                                                       
Query: 301 ttcaggaatgaacaatctggtccagctgcatctttattttagctcatccatctgtttctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ttcaggaatgaacaatctggtccagctgcatctttattttagctcatccatctgtttctt 42

                                                    
Query: 361 tttaccttaaaatgttctatgtctatgaacataggacacta 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tttaccttaaaatgttctatgtctatgaacataggacacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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