BAC Information

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BAC

Clone NameMSMg01-465M23
Chromosome11 (Build37)
Map Location 77,706,717 - 77,706,946
singlet/doubletsinglet
Overlap genePipox
Upstream geneTmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a
Downstream geneSez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465M23.T7 (MSMg01no465_m23.b1)MSMg01-465M23.TJ (MSMg01no465_m23.g1)
ACCAG549903AG549904
length826807
length of high quality
(start - end)
242 (63 - 304)230 (72 - 301)
definitionCHROMAT_FILE: MSMg01no465_m23.b1 PHD_FILE: MSMg01no465_m23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005CHROMAT_FILE: MSMg01no465_m23.g1 PHD_FILE: MSMg01no465_m23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTGCTGGCGCTATACGACTTCCTATTCTGAGAGGATCCGCGGAATT
TTTCGGTTTCCGCGTGTTTCAGAGGCAAGAGAATCAGACCTGAATTTTAC
CACTTGCCATATTAGGACTGATTGTGTGTACACTGCTTAGTTCATCTCTC
TGTGCTTCAGTTTCCTTGCCTATGAGGTGAGCATGAAAATAGTTCCTCCT
CCTTCCTTGGGAAGATTCTGTGGAAGGCTGTGTGGAAACGCCTCTGATGA
ATTTCATTCCTGTCTCTCTCTCATTTCTATTTCTTCAGATTCCACTCATC
CACCTGACCCCTGTTTTTTTGTTATGTAAGCACTGTTAAACTGAACTATG
TATCTAGTCTCAAAACCTTTTCTTCCTTTCTTCCTTTACAACCTTGTGGG
TGTAGAGCCCCTCCCCTCCTCCCCTCTTTTCCCCTTTTTTTCCCCCCACT
TTATACCTACCTTCGTTCACCCATTTTATCATCCCTCCAACTTTTTCCCT
CTCTTCTTTTCTCTTTCCTTTTTTCCTCTCTCTTTTCTGCCCTTCCTTTT
TCTTTTCCCTTTTTTATCACATTCATCTATCTTCCTTCAATATACCTACC
TACTTTCTTCCTCTTCGTCTCTTTTTTTTTTATCCTCTAATTTTTTTATT
TTTTTTCTACCTATATACTCACACACTACCAACCCCTCTAAGATTCTCTC
TTTTTTCCCCTTTTTTTCCTTCCTATTTCCCCCTCCAGCCTCTTTTTTAT
TCTTCTTGTATTCTTTTTCTGTCCCTCTCCTTCTCCCTTTTATCTTATTA
CGACCCTCCTTTCCCTTTCTCTTTTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACAGCAGCTCCTGCTAGGTTCTGGAAGG
AGCAGCTGAGAAAACGCAGCTTTCTCCAAAGCTGGTACATCAGCCTTTGC
CTCTAGGCAAAACTGTCTTTATTTAAGGTTACCCAGAGCAGAATTGATTC
TTTTTCTGGTTGTATCAACCATGTGGGCAAAGACAAGACAGGGTTGCAAG
AATGAAAAGAAGTGGGACACTTCTTGATCCGGGGCAAGAACTAAGAGACT
TTATAGAGTATACCATGTATTCCTCACGCGCACTTAAGGGTGGGAATTCT
CGTTGTACTGCCCAGATTCCCGTGATGCTGTTTCCATCCCTCTCTTCTGT
CCTTTATTCCCCCCCCCTCTCCCTGTTTCCCTTCTCTTTTTTACCCAATC
TTTCTTTAATAACTTCCCTCCTACTCTACTACCTCTCTTAGTTTCCTTAC
CTTTTTTCTCTCACTTTCCTTTTTCTTCGTTTTCCTGTTTTTCTCTCTTC
TACTCCTCCTTCTCCCTACTTCCCCCCCTGCTTACTATCTTTCCTTCTCC
TTCCTCTACACCATTCTTTTTCTCTCCTCTCTACTATATTCTCTCCTTCT
TCCATCTCCCTCTTCCTTCGCTCCCCCCCGCTCCATTGCTTTCTTTATAT
CTCTTTCCTTGTTTCCCTCTCCCCCTCCTCTAGCTCCCCTCTACTATCTA
ATATCTTCTCATTTACATCCTCCGACCCACTTCCCATTTTTTCCTTTCCT
CTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_m23.g1 MSMg01no465_m23.g1 CHROMAT_FILE:
MSMg01no465_m23.g1 PHD_FILE: MSMg01no465_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:03 2005
         (230 letters)



>mm_chr11_77706517_77707146
          Length = 630

 Score =  445 bits (230), Expect = e-129
 Identities = 230/230 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagcagctcctgctaggttctggaaggagcagctgagaaaacgcagctttctccaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacagcagctcctgctaggttctggaaggagcagctgagaaaacgcagctttctccaaag 260

                                                                       
Query: 61  ctggtacatcagcctttgcctctaggcaaaactgtctttatttaaggttacccagagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtacatcagcctttgcctctaggcaaaactgtctttatttaaggttacccagagcag 320

                                                                       
Query: 121 aattgattctttttctggttgtatcaaccatgtgggcaaagacaagacagggttgcaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattgattctttttctggttgtatcaaccatgtgggcaaagacaagacagggttgcaaga 380

                                                             
Query: 181 atgaaaagaagtgggacacttcttgatccggggcaagaactaagagactt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgaaaagaagtgggacacttcttgatccggggcaagaactaagagactt 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)