BAC Information

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BAC

Clone NameMSMg01-465N05
Chromosome11 (Build37)
Map Location 100,443,252 - 100,443,751
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1
Downstream geneDnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465N05.T7 (MSMg01no465_n05.b1)MSMg01-465N05.TJ (MSMg01no465_n05.g1)
ACCAG549915AG549916
length752738
length of high quality
(start - end)		521 (41 - 561)467 (72 - 538)
definitionCHROMAT_FILE: MSMg01no465_n05.b1 PHD_FILE: MSMg01no465_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:04 2005CHROMAT_FILE: MSMg01no465_n05.g1 PHD_FILE: MSMg01no465_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAGGATACCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAACAAAA
AAAAAAATTTGCTCTTTCAAAGCATGGCAGGCAGCTCCCGGTCTCGGGCC
TTTGCTGGCTTAAGGCTCAAACTGTTGGAAAGTGTTCTCTGCAAATACAT
GACTGATCTCCTCCCGCTTACATGAGGCAACATGAAGGGATCTGCACACT
GCTCAGCTAAGTTGCTGTTCTAGGCAGACACAAGAGGCTCTGAAGCTGGA
CTGCAGGTGCTGATGGCACAGATAGCTAGAGAGAGAGAGGCCTTGAACCA
GAGCAGCAGGAGGGACTGCTGAATGTGTCTACTCTTGGGTGTGAGGAGCA
AGGTTGCCTTCCCCAAGTACCCCACAAAGCCCGGGCTGGGAACTCTGGGC
CTTGCTGAGAGGTCTTTGGGACATGGCCACCTGCATGTGGTCGGTTGCCT
TAGCTGTCAGATAAAGGCTTTGTGCTCCAAGTTTCTGGCTGCCAGCCAAT
CCCCACCTTCTCTATGTGTCTGAAGCCAGCCTCTCCTTTCTGCTTCATGA
AAGCCAACACTGTTGCCCTGCCCAGNCTCGTCACAGCTGTGCCCAGCCCG
TATAAAGGAAACAAGGACCGAGGGCCCCAAGCTGGGGGAAAAAAGCTGCC
CCTAAAATTCCACAACCTTAACCCCCGGAAAAAATTGGTTTGACGCAAAA
AA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATCGTACTTTCTAGTTTTGAAAACATATG
TTTATAGGTACAGGGGTACCGTGGCACACTTGCAGAGGTCAAGAACAACT
GCCAGGAGTCAGTCCCCTCTTTCCACTTTACATGGGTTCTGGGGATGGCA
GGAATCAGGCTGAGCCATCTCACTGACTCTTACCTTGTTGACAGACAGGG
TCTCTTACTGGGATGGGGGCTCAGTGGTTAGGCTAGGCTGGCTGGCCAGT
CAGTCGGTCGGTCAGTCGGTTGGTCCCAGGATTTGCCTATCTGCATTTCC
TCAGTGCTAGGGTAACAAACTCATCCTACCACACCCAGCTCTTTAGATGG
GTGTAGAGATGGGACTCAGGTCTGTACGCTTGATGAAACAAGTCCTTTAA
TCAACTGGGCCGCCACCTTAACACCTCAGGCAAGAAGTTATAAATTCTTC
TTTTCGTCTCTCTTTCTGTACCTCTGGATACACACACACACACACACACA
TACAGAATAGAAATTTTATATATACCTATATATATTATACATATACCCAC
ACACCCTTACACACCCACAGAATAGAAACTTTATATATATATATTTATAT
ATATATATATATTATTCCCCCCCCCCCCTACACAAAAGAATATATATGTG
GGGGACTATCCTCATAACCTTTTTATTTTCTCCTCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_n05.b1 MSMg01no465_n05.b1 CHROMAT_FILE:
MSMg01no465_n05.b1 PHD_FILE: MSMg01no465_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:04 2005
         (521 letters)



>mm_chr11_100442992_100443913
          Length = 922

 Score =  901 bits (466), Expect = 0.0
 Identities = 493/504 (97%), Gaps = 5/504 (0%)
 Strand = Plus / Minus

                                                                       
Query: 19  ccagggctacacagagaaaccctgtctcgaaaaaaaacaaaaaaaaaaatt-tgctcttt 77
           ||||||||||||||||||||||||||||||||||||||    ||||||||| ||||||||
Sbjct: 760 ccagggctacacagagaaaccctgtctcgaaaaaaaac----aaaaaaattctgctcttt 705

                                                                       
Query: 78  caaagcatggcaggcagctcccggtctcgggcctttgctggcttaaggctcaaactgttg 137
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 704 caaagcatggcaggcagctcctggtctcgggcctttgctggcttaaggctcaaactgttg 645

                                                                       
Query: 138 gaaagtgttctctgcaaatacatgactgatctcctcccgcttacatgaggcaacatgaag 197
           ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||
Sbjct: 644 gaaagtgttctctgcaaatgcatgactggtctcctcccgcttacatgaggcaacataaag 585

                                                                       
Query: 198 ggatctgcacactgctcagctaagttgctgttctaggcagacacaagaggctctgaagct 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ggatctgcacactgctcagctaagttgctgttctaggcagacacaagaggctctgaagct 525

                                                                       
Query: 258 ggactgcaggtgctgatggcacagatagctagagagagagaggccttgaaccagagcagc 317
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 524 ggactgcaggtgctgatggcacagatagctagggagagagaggccttgaaccagagcagc 465

                                                                       
Query: 318 aggagggactgctgaatgtgtctactcttgggtgtgaggagcaaggttgccttccccaag 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aggagggactgctgaatgtgtctactcttgggtgtgaggagcaaggttgccttccccaag 405

                                                                       
Query: 378 taccccacaaagcccgggctgggaactctgggccttgctgagaggtctttgggacatggc 437
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 taccccacaaagcccaggctgggaactctgggccttgctgagaggtctttgggacatggc 345

                                                                       
Query: 438 cacctgcatgtggtcggttgccttagctgtcagataaaggctttgtgctccaagtttctg 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cacctgcatgtggtcggttgccttagctgtcagataaaggctttgtgctccaagtttctg 285

                                   
Query: 498 gctgccagccaatccccaccttct 521
           ||||||||||||||||||||||||
Sbjct: 284 gctgccagccaatccccaccttct 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space:   466032
Effective search space used:   466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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