MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-466G11
Chromosome	11 (Build37)
Map Location	95,546,905 - 95,547,289
singlet/doublet	singlet
Overlap gene	none
Upstream gene	OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb
Downstream gene	1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2, Igf2bp1, LOC100040040, Gip, Snf8, Ube2z, Atp5g1, Ndp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1
Link	Open Mouse BAC browser

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-466G11.T7 (MSMg01no466_g11.b1)	MSMg01-466G11.TJ (MSMg01no466_g11.g1)
ACC	AG550358	AG550359
length	780	1,433
length of high quality (start - end)	389 (74 - 462)	---
definition	CHROMAT_FILE: MSMg01no466_g11.b1 PHD_FILE: MSMg01no466_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005	CHROMAT_FILE: MSMg01no466_g11.g1 PHD_FILE: MSMg01no466_g11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNAAATTAGTCTACTGTCACTAANAGANTCANTATGCATAGAGGACGCGC GGAAATCCATGTTCCCCTTCAGTGAACCATCCCACTTTATGGAAACCCAG AGTAATAGAGTAGGAGAATGGACTTAGACATCCCCCTTTAGTCTCTGCAC ATAGGCTGATAAACGTACACTTTATATACATGCACGCACACACAGGATTG ATCCATTGATGGATTCCCAAGTTAATGACATTGGGAGGCCTCGTTGGAGG AAGTCACTCAGCGTGGCCATGTGGCCTTTGCCCCTCCTCTCATTCTCTGC ACCCCCAACGCCCTCAGCCGGTACGAGGCAAGCAGTGACCCTCCACATGC TCCCTCTGTAGTGATGTTTCTGACCATGGACTGAGGCCTCAGAAATCGTG AACCTGACTAAACCTTTCTTCCTTTAAGCTGATTTTCCTCAGGTAACGTT TCGCAGCAACAAAAAGTTGGTTAACATCTCCGTATGACAGTGCTGTTGCA GGATGATCTGCTAGGCATGCAAGTTCTTGCTATCAGAGTGCTGATTTATG TTTTCCACCTCCCTTGAAGTCCCTAAATCCTGGCGTTGTTTTGTCTTTAA TTTCATTCAGCTTTTTTCTTTTTTCGCTTTCTCTCGCCCTCTATTCTCTC CTTCCTCTTTCTCTTTTCTTCTCTCTCTCCCCTCTCTCTCTTTTCCGCTA TTTATTTGTACCCTCCTACTATACTCTTATCTGTCTCTCCTCCATCTCCA TTTTTTCTTTTCCTACCATTATTGTTCTAC	NCCTCCCCCCCCCCNNCGCCGCCCTTCCTTTAANNNTATCCACGCTCACT CGGCTCACATTTTTCTATATATATCGTGAGTNTCTGTCGACATATACGTA TTCTATCTATATTATCTCACTCGTATATACATTGCCCGCGACCCATCATC ATCAACCTGACGCCATCTCGCGCGCATCTCCTGAGTATATTATCTATGCC ACGTGGCTCTTGGGTGTGGCCCAGTGTGTCCGTCGTGACAGGAGGATCAG CACTATCTGCTGTTGGCGCGTCCTGTGTGTGGCGCGTTCGGACCCGCAGT GCTGCGCAGACGTGACATTGTGACCACTCTCTATTATTATGAGGGCAGGC GAGCAAGCCCAGAAGAACATAACCACCACTGGCTGAGTCTCACCGGACCA CCCANCATAGATCTCAATCCACTTATAGATGCTTGCTCACACGAAGTTGT GCTCAGTACATATTACAGAAACGACATTGTGTGCCTCTTGTCGTTCACTC ATTNTANAAAAGTGATGAATCTATAACTTCCTGTCGGTGCAGAATATAAA TTAGATACCCATAATATAAAATACTATGTACGTGTCTGTGTCTTCTGTTT CTGTATTTTGTATATTTCTGCCTCGATTCTGTCGTTGCTGCGACGTCATA CGTGTGACCATTATATACGTATTGCGGCGTGTTTAATATATGTTGTTGTG CTTGTCTCGTAGCGTGTGGCGCTCGGTGTATGGAGTAGTGGAGCATCGTG TAGTTGACGGAAGTGTCGAGCCGATGATCTTACTCATACACTCGCCACTA TCCAGCATATTACGCGAACTAAGATAGCCGACTATATGNGATCTCACAAC TGATCACCACCGAAGTAATACACGTGCCGTGGTAATCTGTGAGTGTCGTG CGCCTGCATGTATACTGTGCCGTGATCACGTAGAGCGTGTCTAGCCTCGC ACGTGATGCGCGTACGCTGACGCAGAGATGTAGGTAGCGTATCTACGTAG ACGTACGCGTCGACACCCTCGCGTAGATGAGATCGCGCGGTCTGTATGAT CGCCGTGTGTCCATGCTGGCGTGAAGCACGTAGAGCGCACGCCGCCGACG CGGCCTCTCCGTGTATGCGTCAGAGTGAGGTCACTGCCGCACGAGACGCA AGCGAACACACACATGATCGCGCGATAGAGACACGACGAGAANGCGCGAT GAGCTANTNCCGCGCCAGCGCGACTCAGAGTAGCGCTATGACCGNATACG ATGATATGATGAAGATGGTGCGCGTGATATTCGATCCGCTCNATATGTCG TATGTATAATGGGCGCTCTAGATTCTGCTCTCTCGTCACGAGTTCGTACG TCACTGTCGTGCTCGCTGCTAGTATATTNGTCGTAGCACGCCAATTCAGT AGTAGCGCGTGCGGAACATCAGGAGTATATAGN
quality values	Open. 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Hide. 0 3 7 7 6 7 6 9 9 9 9 7 8 3 0 0 3 8 8 10 8 8 8 6 6 6 6 8 7 8 8 6 3 0 0 0 3 6 6 6 8 12 8 6 6 6 8 8 9 9 9 9 9 11 11 10 6 8 6 6 6 6 6 7 6 6 6 7 7 7 8 8 10 9 8 8 8 8 8 8 3 0 3 9 9 11 11 11 11 12 11 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 6 6 6 6 8 8 8 10 8 8 8 10 10 8 8 10 10 11 10 8 6 6 7 6 10 8 10 9 9 9 9 9 10 10 8 10 6 6 8 8 9 10 9 9 9 8 19 10 9 8 6 6 6 8 6 8 8 10 11 10 8 8 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 10 10 8 8 6 6 6 6 6 6 7 10 8 11 8 8 6 6 6 8 10 10 10 10 10 10 8 8 6 6 6 8 8 6 6 6 6 6 10 8 8 8 8 8 8 8 8 8 8 8 8 8 7 9 9 9 9 9 8 8 8 8 8 8 8 8 9 10 9 9 9 10 10 10 10 8 8 8 10 8 8 9 8 8 6 6 8 10 11 12 19 17 14 8 8 8 8 8 8 8 8 8 9 6 6 6 6 8 6 11 11 11 10 9 9 9 11 16 11 10 10 10 8 8 6 6 8 6 6 8 8 8 6 6 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 6 6 6 6 11 8 8 6 6 8 8 8 9 8 8 8 8 10 8 8 6 6 8 8 15 10 10 8 8 6 6 6 6 6 7 10 10 10 8 3 0 3 8 8 8 15 14 10 10 10 8 8 8 8 8 8 10 10 10 8 8 8 10 10 9 9 10 10 10 10 10 13 9 9 8 8 8 10 10 10 8 6 6 6 6 6 8 8 11 11 7 7 6 6 6 6 13 13 8 8 8 12 13 13 16 9 10 10 12 8 8 8 8 8 6 6 6 8 8 6 6 6 6 8 8 10 10 9 9 9 10 10 10 6 8 6 6 8 3 0 3 3 0 3 6 6 6 6 8 6 8 8 8 8 8 8 8 6 8 8 8 8 8 9 10 10 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 9 9 9 9 8 8 7 7 8 7 8 8 8 8 8 10 8 8 8 9 8 10 8 9 8 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 7 6 8 8 8 8 8 8 8 10 8 10 8 8 8 8 10 8 8 8 8 9 9 9 9 10 8 10 7 7 10 8 9 9 9 8 8 6 6 8 6 6 6 6 8 6 8 10 16 15 15 10 8 8 8 8 8 8 8 6 6 10 8 8 8 6 6 8 8 8 8 9 8 8 8 8 8 8 8 6 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 7 6 8 6 8 8 8 8 8 10 10 12 9 9 9 10 10 9 9 10 10 9 9 8 8 8 8 8 10 10 8 8 9 9 9 10 13 10 8 8 6 6 6 8 6 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 6 6 6 6 6 10 6 8 8 8 9 10 8 9 9 10 10 10 10 10 8 8 9 9 6 6 6 6 8 8 8 8 8 8 8 8 8 10 10 13 10 12 10 10 6 8 6 6 6 6 7 10 12 10 10 8 8 6 8 6 6 6 8 8 9 6 6 6 6 6 6 6 6 8 10 9 9 9 8 6 6 3 0 3 8 8 8 8 8 10 8 8 7 6 6 6 8 8 8 6 6 6 6 8 8 6 6 8 8 10 10 6 6 8 6 6 10 8 10 8 13 8 10 10 10 8 7 6 7 8 8 8 8 8 8 8 9 11 8 8 6 6 8 6 8 8 10 12 9 9 9 10 13 10 11 8 8 8 8 8 8 6 8 7 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 10 9 6 6 6 6 6 6 8 6 11 9 12 8 8 8 10 9 8 9 9 9 8 8 8 8 8 8 8 8 7 7 9 9 8 7 6 6 6 6 6 7 7 7 8 8 9 11 10 9 9 10 10 10 8 8 6 8 6 6 6 10 8 10 10 11 13 8 8 6 6 6 6 8 6 6 6 6 8 9 9 13 13 9 9 9 8 8 6 6 8 8 10 10 10 10 10 10 9 9 8 8 10 10 6 6 6 6 6 6 6 6 6 6 6 8 8 6 6 6 6 6 7 7 8 8 8 8 8 8 6 6 8 8 6 6 8 8 11 9 10 11 11 9 10 10 10 10 8 6 6 6 8 6 6 8 10 8 8 6 6 6 6 8 8 8 8 8 6 6 8 8 8 8 6 6 8 8 11 10 9 9 9 7 6 6 6 6 8 8 8 9 9 9 9 9 7 6 6 6 6 6 6 6 7 6 6 8 6 6 8 6 6 8 6 6 6 7 7 6 6 8 6 6 6 6 8 8 6 6 6 7 7 10 11 8 8 6 6 8 6 6 6 6 6 6 6 9 8 8 8 10 10 10 10 3 0 3 8 10 6 7 6 6 8 8 10 11 11 3 0 3 0 3 6 6 7 6 6 6 10 10 6 6 6 6 6 6 8 8 9 9 9 6 8 8 6 6 6 10 10 10 6 6 6 6 8 3 0 3 9 9 10 10 6 6 6 6 10 6 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 10 10 9 9 10 10 9 9 8 10 7 6 6 8 10 11 10 11 9 3 0 3 6 6 6 6 7 8 8 8 8 8 10 6 6 6 6 6 6 8 8 9 9 9 10 11 10 7 7 6 6 6 6 6 6 6 6 6 8 8 10 11 11 11 6 6 6 8 8 8 8 10 8 8 8 6 9 9 11 12 12 12 15 24 12 12 9 9 10 9 10 10 10 13 11 10 8 8 8 6 6 6 7 7 6 6 3 0 3 6 6 6 6 6 8 6 8 8 6 8 6 6 8 6 6 6 6 8 6 9 6 8 6 6 6 7 7 6 6 8 8 8 8 8 6 6 6 6 6 6 6 6 6 8 8 8 8 8 8 10 3 0

Alignment Information

BAC End 1	BAC End 2
Query= MSMg01no466_g11.b1 MSMg01no466_g11.b1 CHROMAT_FILE: MSMg01no466_g11.b1 PHD_FILE: MSMg01no466_g11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005 (389 letters) >mm_chr11_95546701_95547489 Length = 789 Score = 675 bits (349), Expect = 0.0 Identities = 376/385 (97%) Strand = Plus / Plus Query: 5 catcccactttatggaaacccagagtaatagagtaggagaatggacttagacatccccct 64 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 205 catcccactttatggaaactcagagtaatagagtaggagactggacttagacatccccct 264 Query: 65 ttagtctctgcacataggctgataaacgtacactttatatacatgcacgcacacacagga 124 \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| Sbjct: 265 ttagtctctgcatgtaggctgataaatgcacactttatatacatgcacacacacacagga 324 Query: 125 ttgatccattgatggattcccaagttaatgacattgggaggcctcgttggaggaagtcac 184 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 325 ttgatccattgatggattcccaagttaatgacattgggaggcctcgttggaggaagtcac 384 Query: 185 tcagcgtggccatgtggcctttgcccctcctctcattctctgcacccccaacgccctcag 244 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| Sbjct: 385 tcagcgtggccatgtggcctttgcccctcctctcattctctgcacccccaacgcccccag 444 Query: 245 ccggtacgaggcaagcagtgaccctccacatgctccctctgtagtgatgtttctgaccat 304 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 445 ccggtacgaggcaagcagtgaccctccacatgctccctctgtagtgatgtttctgaccat 504 Query: 305 ggactgaggcctcagaaatcgtgaacctgactaaacctttcttcctttaagctgattttc 364 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 505 ggactgaggcctcagaaatcgtgaacccgactaaacctttcttcctttaagctgattttc 564 Query: 365 ctcaggtaacgtttcgcagcaacaa 389 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 565 ctcaggtaacgtttcgcagcaacaa 589 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 18 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 389 Length of database: 789 Length adjustment: 9 Effective length of query: 380 Effective length of database: 780 Effective search space: 296400 Effective search space used: 296400 X1: 8 (15.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 8 (16.4 bits) S2: 8 (16.2 bits)

BAC End 1

BAC End 2

Query= MSMg01no466_g11.b1 MSMg01no466_g11.b1 CHROMAT_FILE:
MSMg01no466_g11.b1 PHD_FILE: MSMg01no466_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:52 2005
         (389 letters)



>mm_chr11_95546701_95547489
          Length = 789

 Score =  675 bits (349), Expect = 0.0
 Identities = 376/385 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   catcccactttatggaaacccagagtaatagagtaggagaatggacttagacatccccct 64
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 catcccactttatggaaactcagagtaatagagtaggagactggacttagacatccccct 264

                                                                       
Query: 65  ttagtctctgcacataggctgataaacgtacactttatatacatgcacgcacacacagga 124
           ||||||||||||  |||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct: 265 ttagtctctgcatgtaggctgataaatgcacactttatatacatgcacacacacacagga 324

                                                                       
Query: 125 ttgatccattgatggattcccaagttaatgacattgggaggcctcgttggaggaagtcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgatccattgatggattcccaagttaatgacattgggaggcctcgttggaggaagtcac 384

                                                                       
Query: 185 tcagcgtggccatgtggcctttgcccctcctctcattctctgcacccccaacgccctcag 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 385 tcagcgtggccatgtggcctttgcccctcctctcattctctgcacccccaacgcccccag 444

                                                                       
Query: 245 ccggtacgaggcaagcagtgaccctccacatgctccctctgtagtgatgtttctgaccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccggtacgaggcaagcagtgaccctccacatgctccctctgtagtgatgtttctgaccat 504

                                                                       
Query: 305 ggactgaggcctcagaaatcgtgaacctgactaaacctttcttcctttaagctgattttc 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 ggactgaggcctcagaaatcgtgaacccgactaaacctttcttcctttaagctgattttc 564

                                    
Query: 365 ctcaggtaacgtttcgcagcaacaa 389
           |||||||||||||||||||||||||
Sbjct: 565 ctcaggtaacgtttcgcagcaacaa 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information