BAC Information

Click to search

BAC

Clone NameMSMg01-466P11
Chromosome11 (Build37)
Map Location 38,973,753 - 38,973,989
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466P11.T7 (MSMg01no466_p11.b1)MSMg01-466P11.TJ (MSMg01no466_p11.g1)
ACCAG550789AG550790
length7471,821
length of high quality
(start - end)
237 (79 - 315)---
definitionCHROMAT_FILE: MSMg01no466_p11.b1 PHD_FILE: MSMg01no466_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:40 2005CHROMAT_FILE: MSMg01no466_p11.g1 PHD_FILE: MSMg01no466_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGACAATCT
CGCGGAATCTTCCTTTCCCAAAAAAGTTCAAATATTTGCTACATTGAGAG
TATAGTCCCAAAATCTTAAGCATTTGCAATCTTGTTATTATGAAAATTTC
ATACCTCCAAAAATATTTTCAATTGATAATCACAGTGTTCTTGAAACTAT
GACTAATTTCCATATTAACTTTGTGAATCATGATGATAACATTTTATGTC
ATCCAAAAGAGCACACTTGAAAAATTTAAAAGTGAAAAAGATTTCTAGTA
AAACATCACATCGTTGTATTTTTTCAGGAAACATTTGCATAAAATGATAA
AACACTATACACTAGATCAGTATAGGAAATTTTAATTGTACTTTTGATCA
TTGTTGTACTTAAAGTATGGGAAGAATTTTGGATCACTTCTAAACTCTAA
AATATGAAAAAAAGTCAATGTTTTTATAGAACTGTAGAAGTGTGATAAAT
GAGTATGCCTTCTACAGCAGAAGAAATATATGACCAGAGATGTTACATTC
ACCCATTTCTTCTAAATAGAAGTTTCTTTCTTTTACTAGGTTATCAGGAA
GTAATGGAGGTTCACCAGAAACCTTCTGAAATTTATACATTTTTATTTAA
TGTTATGAGATTTATAAGCTACCAAACTCCCCCTACACTTTGTATTTGTA
ACATCTTGTTTTAATATATTTGAAAAATTCTTTATAAATTTTTTGGG
CCCCCCACCCTACCCTCTTTCTATNNNTTTCNTNTGTTTTTATTCTCACN
ACAGACAACACACAAGACTTCTCTCCCCTTCTTCTGCCTACGGAGAAAGT
GATAAATCATAATAATTNAGTATAGACACTCTCCCACACCAGAAGAGCCC
CTCTCTACAAGATACTAACAGATAACCCTTGAATACACGATTACTATACT
AAGCGTACACGACAAATCTCTACTCATCTGTCTTTCACACNAATGTGTGT
ATGCGCGCTTCTCTATGTCTGTAATAAGCGCGGTCACGATGCGGAGCGGT
CANACGCCACTATGTATTGCTGTCGCTGTCGCTCACATTATCACCACACA
GACTGTTCATTCGCTAGTTATCTGTCTCCTCTCCATTGCTCTTGGTCCCC
TCACACTNCTATGACAATATCANATGTATATGTTTATTCGTGTCACTCAC
GTTGTCTCTTATATGTGTCTATTCAATGTTGCTGACTATGTATGTTCACC
CCTCCACTCTGCCTTGTGGATCACACGCGGTGCAGAGTTATGATACCCGN
TCCTTGCTCCAACGATGATGTGCACGCGTCCTACACGCCTGCTATATGGC
ACTCTGACGTAGAAGAGGAAGGGCANGCGTGCGGCGCATGAAGACNATGA
CACCNCGAGCCGAGAGAGGCACTGACCACACTGACGTTATAGATGATGGA
GACAGAGATGANCGAGTGTGTCGCGCTCGTATTTCTGTCCTTCATTATAG
GTGTGCTGCCTCGAGTGGGCAATGTGGTGATATGTAGATAATACGTTTTG
TAGGAATTCTGANTTGANACATGAGTCTACATAGGTATGTGAGTTGTGTG
AGCGTTATCATGACTTCACATCTATTAGTAATCAGTACTACCGCACACCC
CATAATATCTACTAGTATCTGACTGCATACTCCGAGCATAGACGGAGGTA
ACGCATATAAGAAATCAGATACGACGAAGTANGTAGTGTNTANCGTGTAC
GCCCCATATCTCGCCGCGATTCTGTCCTTATGTATCTCGCGATCACATTG
TAATTACCAATTCTGTATGTACGACCTCCACTGTAATGACAGATGCGCGC
GATCTCGATGATGTGTAACGAGGATAGATGTACTATAGCGTCAGCTAATA
ATTGCATGATGTATGTGACGATGTGACTGATGTGCTCCAATACGTGCTAA
AGTATATTCATAATCAGTCATTACGACATCTTATACGATCTCACATATAT
AAATACAGCATTGTGTCGAGCTGTGCCAGTACATGTCGTATCGACCGACG
AGAGAGCACTCATTATTTATAGACANGCATTACGATACGTGATAAGTATT
GTGGNCTTGTGATGCCACTACGCCACACAGACGTATGTATACGTCAGCTC
AGTANTAAGTAGATGAGAGATATAGTATGTATGATANTAACACACGACTC
AGACGATACTATACNTGATTGCACTCTATATATACGTAATAGATATGATC
TAGCGCGTACATAGAGAGCTAGTCACCCNGCACTACTACTAGCTTCCCGA
ATGTANTGTTAGTGCTTCTTATAGATATCCGCGCGTTCGTACTACTCTAC
CCTCTCACNACCCATTAATGACATGTTAATCTCTCNGTATGAGTCACAGC
GATATACGCAGACTCATCATCTACATGAACTCAGCACCCAATCGAACCAG
TAGTAAATATACTGCGTAAAGTANGNACGTATCGNCNGCTGTCAGTGTGA
GTATGCGTGACTCTCGACGCACANAGTTGAAGCGCCGCATAAGGTATCTC
GTAGATCCAGGTCCGCCTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_p11.b1 MSMg01no466_p11.b1 CHROMAT_FILE:
MSMg01no466_p11.b1 PHD_FILE: MSMg01no466_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:40 2005
         (237 letters)



>mm_chr11_38973553_38974189
          Length = 637

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaatatttgctacattgagagtatagtcccaaaatcttaagcatttgcaatcttgttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatatttgctacattgagagtatagtcccaaaatcttaagcatttgcaatcttgttat 260

                                                                       
Query: 61  tatgaaaatttcatacctccaaaaatattttcaattgataatcacagtgttcttgaaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgaaaatttcatacctccaaaaatattttcaattgataatcacagtgttcttgaaact 320

                                                                       
Query: 121 atgactaatttccatattaactttgtgaatcatgatgataacattttatgtcatccaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgactaatttccatattaactttgtgaatcatgatgataacattttatgtcatccaaaa 380

                                                                    
Query: 181 gagcacacttgaaaaatttaaaagtgaaaaagatttctagtaaaacatcacatcgtt 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagcacacttgaaaaatttaaaagtgaaaaagatttctagtaaaacatcacatcgtt 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)