BAC Information

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BAC

Clone NameMSMg01-467A08
Chromosome11 (Build37)
Map Location 22,795,874 - 22,796,214
singlet/doubletsinglet
Overlap genenone
Upstream geneAV249152, LOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
Downstream geneCommd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467A08.T7 (MSMg01no467_a08.b1)MSMg01-467A08.TJ (MSMg01no467_a08.g1)
ACCAG550831AG550832
length739773
length of high quality
(start - end)
442 (74 - 515)340 (75 - 414)
definitionCHROMAT_FILE: MSMg01no467_a08.b1 PHD_FILE: MSMg01no467_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:45 2005CHROMAT_FILE: MSMg01no467_a08.g1 PHD_FILE: MSMg01no467_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAA
TTCACTTTGTTTTCCATGAAGGCCTCGAACTCAGAAATCCACCTGCCTCT
GCCTCCCGAGTGCTTAAAGATGTATGCCACCACGCCCAGCTGACTATTAG
CATTCTGTCTAAGCTCCACCCCACAGTTACCTAGCAACAGCTGGGTATGC
TCCTCCCCACAGTAACCTGGCAACAGCCAAGTAGGCCTGACCCACTATAA
AAGGGGCTCCTTGCCCCCTCTTTGCTCTCTTGCCCTCTTGGGCTCTTCCC
TTCCCCTTTACCTTCCTGTTCTCTCCATGTGTTCATGCCTGGCCTCTACT
TCTCTACTCTCTTTCTCTGCCTTTCTCTGCCTCTACTACCCTCTTAACTC
CCCTCCCCATGCCCTGAATAAACTCTATTCTATACTATACCGTTGTGTGG
CTGGTTTCTCAGGGGGAAGGGATGCCTTGGCATGTGCCTGCTGAGACATC
CCCTTCCCCCACACCTCACCATACCCCGTAGAATTTATCTCCTCTTTCTT
TATCTTTTCCTAAACTCATCATTGACAGTCTCCTGCCTTCTGTCCCCTTC
TTTTAATGCTGTGTATCATCCCCTATTGCCAGTATTCCCCCATTACCAGG
CTGTTCTCCCCCTAACCCCCCACTAGGTTCTCCTCCATTTCCTTCTGTCT
TATCTTTCCTGCCTTTCAATTATAGCTNTCTTCAATGTN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAGGATGCTGCTAGGAGTCATTAA
TAGTTGAGAGTTAAACTGCTGGGAAGCCTGGGAGGACAGGCACAACCCAC
CTGCCTGGGGCTGTGGGCAGCCAGGAAGTCCCATTCATGTTGTACATTAC
CCTCCGAGATGGGCTGTGGGTCTCCCTTCTCTCCCAGGTCATTGTCCCAT
GAAGATGACAGGTGCAGAGTTGAAGAACAGGGTTTGGACGGCCCATGAGT
ATCGACAGTAATAATGACACACTGGAACCAGCTTTGGGGAGACAGATCAA
CTTTACTTGAGTGACTCACAGGTTATATAGTTTTGAGGAAGGGGGATAGG
AATATGCAGGGTGGGCAAAGCTCTTTGGCCCACTGCTAATATATTGTGTT
TGATTGCCGTTCCCTTTTATTATGTTTAGTCGCTTCCCGCTACTCCTTCA
TCCTTTCTCTTCACTATCTCCCCCCTTTTTTCTTCTCTTTTCCTTTTCTA
CCCCTTATCCTTTTCTTTTTTTTCCCCTCTACTTTCCTTTCTTACCCTTT
CTTTTCCCTTACTTTTTTTTCCTCCCCTTTCAATCTTCCCTTCCCTCCCT
CTTTTTTCTCCCCTTATTTCCCCTTTTCCTTTTTTGAAATCTTATCCTTT
TCACCCTCATTCCTCTCTTTCCCTTCCTTTTCAACACTCTTTCTTTTTTT
TTATCATTCTCTACTTTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_a08.g1 MSMg01no467_a08.g1 CHROMAT_FILE:
MSMg01no467_a08.g1 PHD_FILE: MSMg01no467_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:45 2005
         (340 letters)



>mm_chr11_22795674_22796414
          Length = 741

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%), Gaps = 1/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaggatgctgctaggagtcattaatagttgagagttaaactgctgggaagcctgggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 actaggatgctgctaggagtcattaatagttgagagttaaactgctggaaagcctgggag 260

                                                                       
Query: 61  gacaggcacaacccacctgcct-ggggctgtgggcagccaggaagtcccattcatgttgt 119
           |||||||||||||||||||||| || |||||||||  |||||||||||||||||||||||
Sbjct: 261 gacaggcacaacccacctgcctcggtgctgtgggctcccaggaagtcccattcatgttgt 320

                                                                       
Query: 120 acattaccctccgagatgggctgtgggtctcccttctctcccaggtcattgtcccatgaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 acattaccctccgagatgggctgtgggtctcccttctctcccaggtcattggcccatgaa 380

                                                                       
Query: 180 gatgacaggtgcagagttgaagaacagggtttggacggcccatgagtatcgacagtaata 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgacaggtgcagagttgaagaacagggtttggacggcccatgagtatcgacagtaata 440

                                                                       
Query: 240 atgacacactggaaccagctttggggagacagatcaactttacttgagtgactcacaggt 299
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 atgacacactggaaccagctttggggagacagatcaactttacttgggtgactcacaggt 500

                                                    
Query: 300 tatatagttttgaggaagggggataggaatatgcagggtgg 340
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatagttttgaggaagggggataggaatatgcagggtgg 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 741
Length adjustment: 9
Effective length of query: 331
Effective length of database: 732
Effective search space:   242292
Effective search space used:   242292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)