BAC Information

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BAC

Clone NameMSMg01-467F02
Chromosome11 (Build37)
Map Location 22,799,375 - 22,799,705
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik
Downstream geneCommd1, Zrsr1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F02.T7 (MSMg01no467_f02.b1)MSMg01-467F02.TJ (MSMg01no467_f02.g1)
ACCAG551056AG551057
length803710
length of high quality
(start - end)
149 (69 - 217)333 (78 - 410)
definitionCHROMAT_FILE: MSMg01no467_f02.b1 PHD_FILE: MSMg01no467_f02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005CHROMAT_FILE: MSMg01no467_f02.g1 PHD_FILE: MSMg01no467_f02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGCCTGCCTGGTCTACAGAGTGAGTTAGTTCCAGGACAGCC
AGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAGAAAGA
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAAAGAGAAAGATAGAAAGAACAAAGAAAGAAAGAAAGAAAGAAAG
AAAGACTGAGGGAGAGAAAGAAAGAAAGATAGAAAGATAGATAGATAGAT
AGAAAGACAGAAAGAATGATTGATTTATTGAACGATAGATAGATAGATAC
ATTGACTGAATGATTTAATGAAAGATCGGAGACTCTGTGTTTTATGAATG
ATTCTCCTTAATTATTCGTAACTTCCATCCCGACCGGGTTCATCCTCTTA
TTTTGTCTCTTCCTCTTTCTGATCTCGCCCCTCTTTCTTTCTTCTCCCAT
CCTTTCTCTCATCTCTCGCCCCTGTGTTTCTACCTTTTTCTATCTCTTCT
CCTTCCCCTTACTTTCTTTTTTCTCCTTTTTTCTCCACTTCCCTCCGTCT
TTATTTTTTTCTTTCTCTTTATTCTCTTTTTTTCCCCCCCGTTTACGTCT
TCCCCCGCCCACTTCTCTTTTCCCCCTTCTCCTTCTTTTTACCTTTTCCT
TCTTTTCTTACTTTTCTCTCTTTCTTTCTGTGCCCCCTCTTTTACGATCT
TTTTGATTCTTCTCTTTTTCCCGCTGTTTTCTTTTTTTTCCTCCCTATCT
TTG
CCTCCATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGTGTCAATTCTGTTGACCC
TGAGGCTCTGAGGTGAACCTGCCTCACCTCCTTGCACACTAAATGAGTGC
TTACCCTCCAGCCTCCTGTTTAATTTCACTTTTTGTTTGTTTTTACTTAT
TTGAGACAGGGTTACTTTAGGTAAACCTGACTGAACTGGAACTCAGATAT
CTGCCTGCATCTGCCTCCCAAGTGCTGGGATTAATAAAAGTGTGTGTACC
ACCACTTGGCAAATTTCAGTATGTTTTTATAAATGTCCCTCATAATCTTT
ATGCATGCTAAAATATGAGACCCTCTCCAGTGGAACAGATGGGAAAATAA
AGAACCCATCATGCAGAGACAAGCAAGATTGGACTTTGAGAGATTTCTCT
TTTTTACCCACTTTTTAAAATATATTTTTATTTATTCTTGAATACTTTCA
TGCATGTTTACCATGTCTTTTGGTAATATTAGTGCGTCTACTGTACTTTT
TTACCTTCATTGCAGAAATCCTGTGATTATTTTCATTTTATCCGTTCTCC
TCTTCCAGTCCTTATTTATCCCTGTTGCATCTTCCTTATTATCACCTTTT
TCCTTAAACCTGTTTGTTTCTACCCTTTTGATACTTTCCCTCTACTACTT
CAATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f02.g1 MSMg01no467_f02.g1 CHROMAT_FILE:
MSMg01no467_f02.g1 PHD_FILE: MSMg01no467_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:09 2005
         (333 letters)



>mm_chr11_22799175_22799907
          Length = 733

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtgtcaattctgttgaccctgaggctctgaggtgaacctgcctcacctccttgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtgtcaattctgttgaccctgaggctctgaggtgaacctgcctcacctccttgcac 260

                                                                       
Query: 61  actaaatgagtgcttaccctccagcctcctgtttaatttcactttttgtttgtttttact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaatgagtgcttaccctccagcctcctgtttaatttcactttttgtttgtttttact 320

                                                                       
Query: 121 tatttgagacagggttactttaggtaaacctgactgaactggaactcagatatctgcctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tatttgagacagggttactttaggtaaacctgactgaactggaactcagagatctgcctg 380

                                                                       
Query: 181 catctgcctcccaagtgctgggattaataaaagtgtgtgtaccaccacttggcaaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctgcctcccaagtgctgggattaataaaagtgtgtgtaccaccacttggcaaatttc 440

                                                                       
Query: 241 agtatgtttttataaatgtccctcataatctttatgcatgctaaaatatgagaccctctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtatgtttttataaatgtccctcataatctttatgcatgctaaaatatgagaccctctc 500

                                          
Query: 301 cagtggaacagatgggaaaataaagaaccca 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 cagtggaacagatgggaaaataaagaaccca 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)