Query= MSMg01no467_j20.b1 MSMg01no467_j20.b1 CHROMAT_FILE:
MSMg01no467_j20.b1 PHD_FILE: MSMg01no467_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:32 2005
(411 letters)
>mm_chr11_34828323_34829133
Length = 811
Score = 654 bits (338), Expect = 0.0
Identities = 356/366 (97%), Gaps = 8/366 (2%)
Strand = Plus / Minus
Query: 1 tcttcagtctatagattccattaatactctcatctcagccttctacatagctaaaactag 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcttcagtctatagactccattaatactctcatctcagccttctacatagctaaaactag 303
Query: 61 gggcttgaccactatatgcagccagcattcacattttaaaggtctttcatttttgagtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gggcttgaccactatatgcagccagcattcacattttaaaggtctttcatttttgagtca 243
Query: 121 tgattgtcaatcttgggcttattgacaaattcccatttctattggttagcgttgtcaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tgattgtcaatcttgggcttattgacaaattcccatttctattggttagcgttgtcaact 183
Query: 181 caaaacaatgaagagtaacatgggaagagagtgtcattgagcaattatccaaatcgggt- 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 caaaacaatgaagagtaacatgggaagagagtgtcattgagcaattatccaaatcgggta 123
Query: 240 ---atttttttatttaaattaagttaatcgacatggaaagactcagtccactgtaggtag 296
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gaga----tttatttaaattaagttaatcgacatggaaagactcagtccactgtaggtag 67
Query: 297 caccatcccttaggtagtgggtcttgaactatattagagtaagcaagacgagtatagtga 356
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 66 caccatcccttaggtagtgggtcttgaactatatcagagtaagcaagacgagtatagtga 7
Query: 357 tcctgt 362
||||||
Sbjct: 6 tcctgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_j20.g1 MSMg01no467_j20.g1 CHROMAT_FILE:
MSMg01no467_j20.g1 PHD_FILE: MSMg01no467_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:32 2005
(419 letters)
>mm_chr11_34644562_34645380
Length = 819
Score = 772 bits (399), Expect = 0.0
Identities = 414/419 (98%)
Strand = Plus / Plus
Query: 1 atattttcaatatgacttgaatatgctgtgctaaaaatacaaatttggagagtgccaaca 60
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 atattttcagtatgacttgaatatgctgtactaaaaatacaaatttggagagtgccaaca 260
Query: 61 ttaagtccttaagattccttatcactagaagatgagcaaaactgctgacaagtctcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaagtccttaagattccttatcactagaagatgagcaaaactgctgacaagtctcagaa 320
Query: 121 cagaaggctgctatgaaggaaagaccggaagtatcctcaggtactactcaggaagtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaggctgctatgaaggaaagaccggaagtatcctcaggtactactcaggaagtaagt 380
Query: 181 ggaaagcatgtaatgtttctgggagccaaaaagacaaaattcctccaggaggtggaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaagcatgtaatgtttctgggagccaaaaagacaaaattcctccaggaggtggaaaga 440
Query: 241 aaccttctcggcaaatgatactaaggcaaattagatgagaaactggaaactgcaggtcac 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccatcacggcaaatgatactaaggcaaattagatgagaaactggaaactgcaggtcac 500
Query: 301 tggcccaaggtggagaagtgaggcaaaagcctggttaggataggtttgagagccaggcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggcccaaggtggagaagtgaggcaaaagcctggttaggataggtttgagagccaggcag 560
Query: 361 tggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagt 419
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 tggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggtggatttctgagt 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space: 332100
Effective search space used: 332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
