BAC Information

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BAC

Clone NameMSMg01-467L10
Chromosome11 (Build37)
Map Location 26,338,460 - 26,338,695
singlet/doubletsinglet
Overlap geneFancl
Upstream gene5730522E02Rik, LOC100042328, LOC100042345
Downstream geneVrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467L10.T7 (MSMg01no467_l10.b1)MSMg01-467L10.TJ (MSMg01no467_l10.g1)
ACCAG551356AG551357
length724731
length of high quality
(start - end)
243 (70 - 312)517 (71 - 587)
definitionCHROMAT_FILE: MSMg01no467_l10.b1 PHD_FILE: MSMg01no467_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005CHROMAT_FILE: MSMg01no467_l10.g1 PHD_FILE: MSMg01no467_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCGGAATT
CCATGACATCTCGAAAATACAGTGTGACCTGCCTCAAAATAAATAAATAA
ATAATAAATTTTTAAAAACTTAAAAAGGAAAATAAAAAATAAAACAAACA
AACAAACAAAAAAAAAACCATGGTGAAGTGTAAAATGAAGTGGGCATGCC
CAACTGTGGGTCTGCAGCTTTGAGGAAAGATCTCATTCCCTGCTATTCAA
TAGGACTCTTTAATTACACTCTTCAGTCATCAAAGATCGCCTGTCAGACA
GAGGCTGTATCATTATTCTCGCTCTTCTTCACCCATGGCACTGTCCCAGG
AGGATCAGAGTTCCCCATGGTAGGAAATATATAAGACACTGCTTCTCAAA
TCTGATCAAATCTAACTATTCTAACTGCCTCTGGCAAGGCTACTCCCTGA
AACCTGTAGTTCATGACACAGTCTCAGGTAGAAAACAGTCTGTGACCTGG
GCAAAAAAAAAAAAAAGTCCTTTTGTCTAAATGCCTGACATTAGCCCATG
TCAATCTATCAGCTGACAAGAACGACATGCATGGTCCTGCGTGTGGGAAA
AGAACAGGAGGGCTCCAACTGGATTCCCAAAACTCACCCGCTTTTATTTA
CTGAATACCGAAAAAAATGCTTGTGGGAAAGGTTCAATCCTCCCGTGTCT
AAAAAACACCTTTTGTGGCCCCCN
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTACCCCCTTAAGGGCCCCAATTCTTCCTC
CTAATTTTACATAAGAGTATTCAAGTTCCATTGATTGATTGCTTGGCTGT
GAGTGTCTGCATCTGTCTGAGTCAGATGCTGGGTGGAGCCTCTCAGAGAA
CAGCAATGCTAGACTCCTGTCTGAAAGCAAAACAGTATTGTTAATAGTGT
CATTAATTGGTGCCTGCCCATTGGATGGGTCTCAAACTGGGCTGGTTATT
GGTTGGTCATTCCCTCAGTCTTTGCTCCATCACAACGCCTGCATTTCTTG
TAGACAGGATAAGTGTTGGGCCAAAAGTTTTGTGGATGGATTGGTGTCCT
TATCTCTCCATTGGAGTTTCTGCCTGGCTAGAGGAGGTGGCCTCTCCAGG
TTCTGTATCTCAAATGCTGTGAGTTACAGCTAAGAATATGGTATTGGATG
TTAGATTGTGTCAAAGGCTTTTTCAGCATGTAATAAAATGATCATGCAAT
ATTTTTTTCAGTTTGCATATATGGTGGGTTATGTTGAACCAGTCCTATAT
CCTTAAGATGAAGCCTTCTTGATCATGATGGATGAAGGTTTTTATGCCTC
TAATATACCACCTTTGTTCTCCCCCCCTTTTATCTTTTTACTTTTTCTTT
CCTGTTCCCATTACACTTTCCCTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_l10.b1 MSMg01no467_l10.b1 CHROMAT_FILE:
MSMg01no467_l10.b1 PHD_FILE: MSMg01no467_l10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:40 2005
         (243 letters)



>mm_chr11_26338162_26338804
          Length = 643

 Score =  408 bits (211), Expect = e-118
 Identities = 232/243 (95%), Gaps = 7/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgtgacctgcctcaaaataaataaataaataataaatttttaaaaacttaaaaagga 60
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 534 cagtgtgacctgcctcaaaataaataaataaataataaattttttaaaatttaaaaagga 475

                                                                       
Query: 61  aaataaaaaataaaacaaacaaacaaacaaaaaaaaaaccatggtgaagtgtaaaatgaa 120
           ||||||||||||||||||||||||       |||||||||||||||||||||||||||||
Sbjct: 474 aaataaaaaataaaacaaacaaac-------aaaaaaaccatggtgaagtgtaaaatgaa 422

                                                                       
Query: 121 gtgggcatgcccaactgtgggtctgcagctttgaggaaagatctcattccctgctattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 421 gtgggcatgcccaactgtgggtctgcagctttgaggaaagatctcattccctgctaggca 362

                                                                       
Query: 181 ataggactctttaattacactcttcagtcatcaaagatcgcctgtcagacagaggctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataggactctttaattacactcttcagtcatcaaagatcgcctgtcagacagaggctgta 302

              
Query: 241 tca 243
           |||
Sbjct: 301 tca 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)