BAC Information

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BAC

Clone NameMSMg01-467P04
Chromosome11 (Build37)
Map Location 58,915,598 - 59,055,640
singlet/doubletdoublet
Overlap geneA230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1
Upstream geneCnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn
Downstream geneWnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467P04.T7 (MSMg01no467_p04.b1)MSMg01-467P04.TJ (MSMg01no467_p04.g1)
ACCAG551534AG551535
length746741
length of high quality
(start - end)		471 (45 - 515)462 (72 - 533)
definitionCHROMAT_FILE: MSMg01no467_p04.b1 PHD_FILE: MSMg01no467_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:58 2005CHROMAT_FILE: MSMg01no467_p04.g1 PHD_FILE: MSMg01no467_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,915,598 - 58,916,065)(59,055,179 - 59,055,640)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGGTGTTTAGGACTATTCCAACAAAGTTATCTCTTAAAACCAACA
GAAATAAAGACAGTTCAAGAGAAACAAACTAAAGTAACTCGTGACATCCA
AGACAACACTTACTTAAGGCTCTAATTGGAATCCTAAACTCTGAGGAGGA
AAAAAGTCTTAATGACAGTAGCACGTGGATTAATACATTTCACGAGAAGA
GTAGATGAACAGGGGAGACATGGAAAAGATTCAGTTGTGACCAATCCTGT
ATATGAGTAAACCTCGTTAACAAAAACAGGGAAGGGGAAAAGAAAAAAGA
GTCTGGCGAGATGACTCAGAGGTTAAGAGTAATGGCTGCTCTTGCAGAAG
ACCTGGGTTCAATTTCCAGCACCCATGTGGCAGCTCACAATTATCTGTCA
CTCCAGTTCCAGGGGAGCTGGCGCCCTCTTATGGTCTCTGTGGACACTGC
ATACATGCAATGTACATACATGTATGCAGACACTCATACACATAAAATCA
AAATAAATCTTTTTTTTTAAAAAAATGAATGAATAGTAATCCAACTAAAA
TAACCTTCCAGGGACAAAAATCTTTTACATATGATAGGAATCCTAACACA
CCTTTCTATTTTACTCCTAACTGGGAAAGGACCTTTCCTCTCTCGACAAA
AGATTCCAATTTCGACCAATATAATTATATTCCCGTGACTACAAAG

ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAGCCCGAGCAGATGGCTGGGAGGGCTT
CTCGGGAGAAGGGGACTTCCCCAGTTGTTCGCCTCTCAGTGCAGAGAGCA
GGCAGGCCTGTGCAGAACCCTCAGACTCCTTGGCAGTGGTGGCTCAGCAG
CCTCCCTTCCCCATCCCCCAGGCTCCTCAGCTCCCTCTACTGCAGGAAGC
CCAGGGTGTTCCCACAGCCTCACTCTGTCCCTTCTCCATTCCTGGCACAA
GCTTGAGACACTCTGCCACCCCACAGTGCCAGACTATAAAGCAAGCTGGC
TTCTAAGCAGCCCACCAGACACACAGCCCTGGAGGGGCGAGTCCCAAAGC
TCTAAGAAGGCCATTTGACGTCTGTAGCTTGGAGTAGACTCCAGGGATTA
CACATGCTTCTTCCCCGACTGTTTTTATTGTCCAGGTCTGGGTTGGGGCA
ATAAAGTGAAGTGCCAGCTTGCACCTCGGGGACCAGGGACTAATCTGGTG
GGAGTCGTGACCCATGCAACCGTCCATATGCCATGGACCTGATCCTACAC
CTCCTCTGCTTAAGGATATTCCATGGTTTCCCTGTGTCCCCCTGGTGAAC
TTTAACTTTCTCAGGCCTATGGTCCCTGGGCACCCCATTCCCCCTTACAA
AAGTCCTTGCAGGATTGCGCGTGCGAGACTGATAAAACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_p04.b1 MSMg01no467_p04.b1 CHROMAT_FILE:
MSMg01no467_p04.b1 PHD_FILE: MSMg01no467_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:58 2005
         (471 letters)



>mm_chr11_58915395_58916265
          Length = 871

 Score =  835 bits (432), Expect = 0.0
 Identities = 459/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctggtgtttaggactattccaacaaagttatctcttaaaaccaacagaaataa 63
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctggtggaaaggactattccaacaaagttatctcttaaaaccaacagaaataa 263

                                                                       
Query: 64  agacagttcaagagaaacaaactaaagtaactcgtgacatccaagacaacacttacttaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agacagttcaagagaaacaaactaaagtaactcgtgacatccaagacaacacttacttaa 323

                                                                       
Query: 124 ggctctaattggaatcctaaactctgaggaggaaaaaagtcttaatgacagtagcacgtg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ggctctaattggaatcctaaactctgaggaggaaaaaagtcttaatgacagtagcaagtg 383

                                                                       
Query: 184 gattaatacatttcacgagaagagtagatgaacaggggagacatggaaaagattcagttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gattaatacatttcacgagaagagtagatgaacaggggagacatggaaaagattcagttg 443

                                                                       
Query: 244 tgaccaatcctgtatatgagtaaacctcgttaacaaaaacagggaaggggaaaagaaaaa 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 tgaccaatcctgtatatgagtaaacctcgttaacaaaaacagggaagggggaaagaaaaa 503

                                                                       
Query: 304 agagtctggcgagatgactcagaggttaagagtaatggctgctcttgcagaagacctggg 363
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 agagtctggccagatgactcagaggttaagagtaatggctgctcttgcagaagaccgggg 563

                                                                       
Query: 364 ttcaatttccagcacccatgtggcagctcacaattatctgtcactccagttccaggggag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcaatttccagcacccatgtggcagctcacaattatctgtcactccagttccaggggag 623

                                                           
Query: 424 ctggcgccctcttatggtctctgtggacactgcatacatgcaatgtac 471
           ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 624 ctggcgccctcttatggcctctgtgggcactgcatacatgcaatgtac 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no467_p04.g1 MSMg01no467_p04.g1 CHROMAT_FILE:
MSMg01no467_p04.g1 PHD_FILE: MSMg01no467_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:58 2005
         (462 letters)



>mm_chr11_59054979_59055840
          Length = 862

 Score =  893 bits (462), Expect = 0.0
 Identities = 462/462 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagcccgagcagatggctgggagggcttctcgggagaaggggacttccccagttgttcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 caagcccgagcagatggctgggagggcttctcgggagaaggggacttccccagttgttcg 603

                                                                       
Query: 61  cctctcagtgcagagagcaggcaggcctgtgcagaaccctcagactccttggcagtggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 cctctcagtgcagagagcaggcaggcctgtgcagaaccctcagactccttggcagtggtg 543

                                                                       
Query: 121 gctcagcagcctcccttccccatcccccaggctcctcagctccctctactgcaggaagcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctcagcagcctcccttccccatcccccaggctcctcagctccctctactgcaggaagcc 483

                                                                       
Query: 181 cagggtgttcccacagcctcactctgtcccttctccattcctggcacaagcttgagacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cagggtgttcccacagcctcactctgtcccttctccattcctggcacaagcttgagacac 423

                                                                       
Query: 241 tctgccaccccacagtgccagactataaagcaagctggcttctaagcagcccaccagaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctgccaccccacagtgccagactataaagcaagctggcttctaagcagcccaccagaca 363

                                                                       
Query: 301 cacagccctggaggggcgagtcccaaagctctaagaaggccatttgacgtctgtagcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cacagccctggaggggcgagtcccaaagctctaagaaggccatttgacgtctgtagcttg 303

                                                                       
Query: 361 gagtagactccagggattacacatgcttcttccccgactgtttttattgtccaggtctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gagtagactccagggattacacatgcttcttccccgactgtttttattgtccaggtctgg 243

                                                     
Query: 421 gttggggcaataaagtgaagtgccagcttgcacctcggggac 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttggggcaataaagtgaagtgccagcttgcacctcggggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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