BAC Information

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BAC

Clone NameMSMg01-468C22
Chromosome11 (Build37)
Map Location 13,073,236 - 13,073,722
singlet/doubletsinglet
Overlap genenone
Upstream geneCobl, LOC627244
Downstream geneLOC432535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468C22.T7 (MSMg01no468_c22.b1)MSMg01-468C22.TJ (MSMg01no468_c22.g1)
ACCAG551714AG551715
length794790
length of high quality
(start - end)		490 (52 - 541)439 (80 - 518)
definitionCHROMAT_FILE: MSMg01no468_c22.b1 PHD_FILE: MSMg01no468_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:17 2005CHROMAT_FILE: MSMg01no468_c22.g1 PHD_FILE: MSMg01no468_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCAGAGTTCCATCTTTCAGATGACTCTAGATTCTGTAAA
GATGAAAGTTTTCCCTATCATATGACATATATAATCTTTTGTAAAAATAT
GTAGTATATGCTAAGTGGCTTGTGGCATTTTCAAAATCTGCATATTTTCT
AGTGTTACATTTCCTTGTCCTATGTTTGTCTTAACATATTTTAATTAGTT
ACTATATATTATGTAAGGTAAAGGTTTAATATCATCCTACTGATTGATGA
CCAGCTTTCTTGGCAATAATATCTCCCCTTTTTTATCAAGATTATTATTC
CTTGTACTTTGCTGCTTAGGGGTATTGTATCTTTTCTCCCTTAGTTGAAA
CATTTCCTGGAGAGAGAGGAAGAAAAGTAATACATACAAGATACAGGGAG
TAGATGAAAGTTACAAGTCTAGTATATAGTCCTAGTATACTCCTAAAATT
ATAAGATTCTTACGGGAGAGCTATAAGGTATAATAAGTAGTATAATTGTT
AGAGGAGACTCTCGTACTAACTTCTCTGCCTTGCAGCCATAAAAGGAACA
GGAACTATAGAAATTATGAGTTGTTATGTATGCTAACAAAGGATTTTGGG
TGATGCAGGGGGCTTTTCATAACAAATGGTGCTATAAGAAAGGGCTAAAA
TTTTTGTAAAAAACCCAAAATTTTACTATTTCCCAAGCTAAAATTAGGCC
CAATAATTTACTTTGAAAATGGTAGCCCCCCCCTTAAGGGAAAA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCAAATGGATGGATCTG
GAGGACATCATCCTGAGTGAGGTAACCAAATCACAAAAAAACTCACATGA
TATGCACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACCTAA
GATACAATTTGCAAAACACATGAAACTCAAAAAGAAGGAAGACCAAAGTG
TGGATATTTCATTCCTCCTTAGGATGGGGAACAAAATACCCAAGGAAGGA
GTTACAGAGACAAAGTTTGTAGCTGAGACTGAAGGAAGGACCATCCAGAG
GCTGTCCTACCAGGAAACCATCCATAAACATCCACCAAACCCAGACACTA
TTGCAAATGCCAGCAAGATTTTGCAACAAGACCCTGATATTGCTGTCTCT
TGTGAGGCTCTGCTAGTGCCTGGCAAATACAGAAGTGAATGGTCACAGTC
ATCTATTGGATGGAACACATAGCTGCCAATGGAGGAGCTAGAGAAAGTAC
CCAAGGAGCTAAAGGGGTCTGCCATCCTATGGAGGAATAACAATATGAAC
TAACCAGGATCCCCCCGAGCTCGGGTCTCCAGCTGCATATATGGCCGAAG
AAGGGCCAATTCCACATCCATGGTGAGGAAAGGCCCCTGTTCTTGTGAAA
ATATTTTCTCCCTCCAGGGGGAAACCATGGGCCCGTAATGGAGGGGGGTG
GGTTTAGTATCTTCCCCCATCTCCCACTCCGTCTTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_c22.b1 MSMg01no468_c22.b1 CHROMAT_FILE:
MSMg01no468_c22.b1 PHD_FILE: MSMg01no468_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:17 2005
         (490 letters)



>mm_chr11_13073033_13073922
          Length = 890

 Score =  911 bits (471), Expect = 0.0
 Identities = 483/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccagagttccatctttcagatgactctagattctgtaaagatgaaagttttcc 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccagagttccatctttcagatgattctagattctgtaaagatgaaagttttcc 263

                                                                       
Query: 64  ctatcatatgacatatataatcttttgtaaaaatatgtagtatatgctaagtggcttgtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctatcatatgacatatataatcttttgtaaaaatatgtagtatatgctaagtggcttgtg 323

                                                                       
Query: 124 gcattttcaaaatctgcatattttctagtgttacatttccttgtcctatgtttgtcttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcattttcaaaatctgcatattttctagtgttacatttccttgtcctatgtttgtcttaa 383

                                                                       
Query: 184 catattttaattagttactatatattatgtaaggtaaaggtttaatatcatcctactgat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 catattttaattagttactatatattatgtaaggtaaaggtttaatatcatcctactgat 443

                                                                       
Query: 244 tgatgaccagctttcttggcaataatatctccccttttttatcaagattattattccttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 444 tgatgaccagctttcttggcaataatatctccccttttttatcaagattattattcctta 503

                                                                       
Query: 304 tactttgctgcttaggggtattgtatcttttctcccttagttgaaacatttcctggagag 363
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 tactttgctgcttaggggtattgtatcttttctctcttagttgaaacatttcctggagag 563

                                                                       
Query: 364 agaggaagaaaagtaatacatacaagatacagggagtagatgaaagttacaagtctagta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 agaggaagaaaagtaatacatacaagatacagggagtagatgaaagttacaagtctagta 623

                                                                       
Query: 424 tatagtcctagtatactcctaaaattataagattcttacgggagagctataaggtataat 483
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 tatagtcctagtatactcctaaaattttaagattcttacgggagagctataaggtataat 683

                  
Query: 484 aagtagt 490
           |||||||
Sbjct: 684 aagtagt 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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