BAC Information

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BAC

Clone NameMSMg01-468J03
Chromosome11 (Build37)
Map Location 71,850,525 - 71,850,778
singlet/doubletsinglet
Overlap geneAipl1
Upstream geneLOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
Downstream gene6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468J03.T7 (MSMg01no468_j03.b1)MSMg01-468J03.TJ (MSMg01no468_j03.g1)
ACCAG552011AG552012
length789819
length of high quality
(start - end)
164 (82 - 245)257 (74 - 330)
definitionCHROMAT_FILE: MSMg01no468_j03.b1 PHD_FILE: MSMg01no468_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:50 2005CHROMAT_FILE: MSMg01no468_j03.g1 PHD_FILE: MSMg01no468_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCACTCAACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAAA
TCCGCGGAATTCTGTAAAACTACAAAAAGATGTGAGAAAAACACCTCGTT
AATTGAATTTCTGGTTCTTCCCATGGTCTGCTTAGTCTGGGGAAAGAGGA
TCCTGTCAATGCAAGTCTTAAAAATTTTTTAAATTAAATATATGTTTAAT
GTTATATATTGATTTACTATATTTAAAATTGTATAGTATATACTGTTATG
GCTATTATCGATTATTATATATCATATATTAAACTATATAAAAGATTATA
CACACATTGACATATGTGTGGAGGTCATATTATTACTTTTGGTAGTCTGG
TCTCTCCTTCTACCATGTGAATTCCTGAAATCATATTCAAGTTATCCGTT
TTGTTCACAGTCTCTGTTACTCTCCGAGTTATTTGATTGTCCTTGCCCCT
TTTTTACTTTTTATTCCACTCTCTATTGCTTTGCTCTATTTTTTTACATA
TTAATCCTGTCATACATATTTTTTTCCTCTACCTTTCCTCTTCTTATTCT
TTTTTTTTTCCCTTTTTACTCTTTCATCTCATTTTATTCATTTTTTTCTT
CTATTTCATCTTCATTCTTCTTCCTTCTCTTTCATTTCATTCTCACTCCT
TCTATTTTCTACACTTTTTATATAATTCCTTTTTTTTATCCCTAACATAT
CTTTATCTATCCTATTTCAATCCCCCAATATCATTATTCTATATTATCCC
ATTTTTTATTTATTTTATCAATAATTTCTACTATTATAT
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTCTCCAATAAGCTCCAATGTCCAGG
AGTGTGTTCCTCCACCCCTGAGAGACCCATCAAACACAAGAGGACAAACG
CCATAACTCCTGAGGTTCCTTCCTACTAACTTGACATTTGGAGCTCTGAA
ATTTTCCTTAACCTCTCCTCTTAGCTAAAGCTACCCTGAAAACTACCAAA
AAGGACCTGTCTATAAACTCCAAAGCAAGGGAGCCTGGGTAATGGAAAGG
CAAGTCCAGCAAGGTCCTGCCTGGCTGTTTTATGGAGGGATACCTGCAAT
GCCCTGGGCCCAGCTGAAACAGAGAAAAGAAGCACGGGGTCCTATCTGGG
CGTAGATACTCACTCGAGAGCCAGTGATGAAGCTGGGGAGCTCTCCCGTC
CCCCCATGCAGAATGGTCTTCTTGACACCCTCCACATTGAGGAGTAGAGA
GACGTCCATGTTTGCATTTAGTCGAGAGGTTTTGTTCACGTCTAGATTAT
TCCTACCACGCTGGTTACAATCTTGTGCTGATACCTTGTTTAAGAGGACT
TGTGCTCCTCTTTATATAATCCCTCCTGAAGTCGATTTATAGTACTCTGT
ACTTTTTCTCTATCCATTCTTCGAACATGGTTCTTAATACAGTTTCAAAT
AGCTACTATTACTGGTTATCCTAATAACCTTTCATTATCTCCTCACGCCT
CCCTATACCTCTCTGCCTACTCTTCTTATCCCTGCCTCACACCCTCATTT
TTTATATACTATAACTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_j03.g1 MSMg01no468_j03.g1 CHROMAT_FILE:
MSMg01no468_j03.g1 PHD_FILE: MSMg01no468_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:50 2005
         (257 letters)



>mm_chr11_71850325_71850981
          Length = 657

 Score =  470 bits (243), Expect = e-137
 Identities = 252/255 (98%), Gaps = 2/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctccaataagctccaatgtccaggagtgtgttcctccacccctgagagacccatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctccaataagctccaatgtccaggagtgtgttcctccacccctgagagacccatcaa 260

                                                                       
Query: 61  acacaagaggacaaacgccataactcctgaggttccttcctactaacttgacatttggag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaagaggacaaacgccatatctcctgaggttccttcctactaacttgacatttggag 320

                                                                       
Query: 121 ctctg-aaattttccttaacctctcctcttagctaaagctaccctgaaaactaccaaaaa 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctggaaattttccttaacctctcctcttagctaaagctaccctgaaaactaccaaaaa 380

                                                                       
Query: 180 ggacctgtctataaactccaaagcaagggagcctgggtaatggaaaggcaagtccagcaa 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 g-acctgtctataaactccaaagcaagggagcctgggtaatggaaaggcaagtccagcaa 439

                          
Query: 240 ggtcctgcctggctg 254
           |||||||||||||||
Sbjct: 440 ggtcctgcctggctg 454


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)